Hb_001454_240

Information

Type -
Description -
Location Contig1454: 161531-163791
Sequence    

Annotation

kegg
ID cic:CICLE_v10006071mg
description hypothetical protein
nr
ID AEH05972.1
description translationally controlled tumor protein [Hevea brasiliensis]
swissprot
ID Q9ZSW9
description Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1
trembl
ID F8SKC4
description TCTP.1 OS=Hevea brasiliensis GN=TCTP PE=2 SV=1
Gene Ontology
ID GO:0005737
description translationally controlled tumor protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11771: 161884-163902 , PASA_asmbl_11772: 163005-163321
cDNA
(Sanger)
(ID:Location)		 001_A20.ab1: 161935-163865 , 001_B23.ab1: 161993-163902 , 001_F14.ab1: 161913-163865 , 001_M22.ab1: 161916-163865 , 002_B24.ab1: 161975-163865 , 002_D09.ab1: 161898-163866 , 002_D13.ab1: 161990-163866 , 002_F19.ab1: 161913-163865 , 002_L03.ab1: 161918-163865 , 003_B22.ab1: 161973-163865 , 003_J04.ab1: 161935-163865 , 003_M22.ab1: 161891-162468 , 004_D05.ab1: 161924-163865 , 004_I07.ab1: 161985-163865 , 004_M23.ab1: 161963-163869 , 005_H18.ab1: 162001-163902 , 006_G12.ab1: 162000-163865 , 007_H08.ab1: 161960-163865 , 008_N15.ab1: 162015-163865 , 010_B15.ab1: 162073-163865 , 010_C16.ab1: 161975-163865 , 010_K14.ab1: 161990-163865 , 010_M11.ab1: 162163-163869 , 011_B15.ab1: 161943-163865 , 011_H20.ab1: 161995-163865 , 012_C01.ab1: 162007-163865 , 013_M04.ab1: 161999-163865 , 014_E21.ab1: 161913-163865 , 015_H02.ab1: 161997-163865 , 015_I08.ab1: 162029-163865 , 015_M07.ab1: 162033-163866 , 016_F05.ab1: 161947-163865 , 016_J04.ab1: 161930-163865 , 016_J11.ab1: 161913-163865 , 018_I13.ab1: 162065-163865 , 018_J23.ab1: 162013-163865 , 020_B20.ab1: 161983-163865 , 020_B21.ab1: 161957-163865 , 020_K24.ab1: 161977-163865 , 020_P11.ab1: 161934-163865 , 021_B03.ab1: 161995-163902 , 021_L01.ab1: 161946-163865 , 021_L24.ab1: 161956-163865 , 021_N04.ab1: 161912-163865 , 022_A18.ab1: 161939-163865 , 023_D12.ab1: 162034-163865 , 024_J08.ab1: 162025-163865 , 025_H06.ab1: 161955-163865 , 025_H14.ab1: 161909-163865 , 025_J10.ab1: 161958-163865 , 026_F02.ab1: 162076-163866 , 027_N09.ab1: 162047-163865 , 028_E02.ab1: 161985-163865 , 028_K08.ab1: 162037-163865 , 029_A01.ab1: 162007-163865 , 029_G07.ab1: 161982-163865 , 029_O15.ab1: 162483-163865 , 030_G22.ab1: 161993-163869 , 030_H11.ab1: 161933-163866 , 031_M01.ab1: 161927-163865 , 031_M03.ab1: 162065-163865 , 032_D01.ab1: 162034-163865 , 033_P23.ab1: 162000-163865 , 034_F12.ab1: 161937-163865 , 036_F18.ab1: 161959-163865 , 036_H11.ab1: 161933-163865 , 038_K14.ab1: 161944-163865 , 038_O16.ab1: 161939-163865 , 039_G08.ab1: 161958-163865 , 039_J05.ab1: 161982-163865 , 040_C10.ab1: 161958-163865 , 040_C17.ab1: 161895-163865 , 040_G22.ab1: 161980-163869 , 040_O03.ab1: 162033-163865 , 041_D06.ab1: 161989-163865 , 041_K06.ab1: 161978-163865 , 042_E19.ab1: 162105-163865 , 042_I03.ab1: 161965-163865 , 043_B23.ab1: 161913-163865 , 043_E01.ab1: 161998-163865 , 044_E03.ab1: 161955-163866 , 044_G24.ab1: 161952-163866 , 045_J22.ab1: 161943-163865 , 045_L23.ab1: 161929-163865 , 045_M21.ab1: 161935-163865 , 046_E14.ab1: 161930-163865 , 046_P10.ab1: 162002-163865 , 047_G13.ab1: 161993-163865 , 047_L13.ab1: 162001-163865 , 049_M02.ab1: 162160-163865 , 049_N14.ab1: 162035-163865 , 050_H17.ab1: 162050-163865 , 050_J19.ab1: 161993-163865 , 050_K05.ab1: 162129-163865 , 051_J01.ab1: 162034-163863 , 052_E20.ab1: 161940-163865 , 053_C08.ab1: 161975-163865 , 053_F08.ab1: 162004-163865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_240 0.0 - - translationally controlled tumor protein [Hevea brasiliensis]
2 Hb_001584_310 0.2465716683 - - hypothetical protein POPTR_0013s00630g [Populus trichocarpa]
3 Hb_011360_010 0.2532067626 - - PREDICTED: uncharacterized protein LOC104216696 [Nicotiana sylvestris]
4 Hb_000023_200 0.2539113855 - - hypothetical protein POPTR_0018s02910g [Populus trichocarpa]
5 Hb_004324_340 0.2576535092 - - conserved hypothetical protein [Ricinus communis]
6 Hb_173953_010 0.2578851388 - - hypothetical protein RCOM_1267370 [Ricinus communis]
7 Hb_000703_240 0.2581285986 - - -
8 Hb_003906_100 0.2593169397 - - hypothetical protein JCGZ_26174 [Jatropha curcas]
9 Hb_000340_010 0.2624627234 - - -
10 Hb_000218_030 0.2631030522 - - -
11 Hb_009615_150 0.2635805117 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
12 Hb_003929_260 0.2644804916 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000497_180 0.2654913264 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
14 Hb_000567_210 0.268613979 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
15 Hb_005843_150 0.2690961533 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
16 Hb_004607_150 0.2706210797 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
17 Hb_000339_070 0.2712447805 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
18 Hb_054127_040 0.272183069 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
19 Hb_006120_110 0.2742594214 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000028_420 0.2743892922 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001454_240 Hb_001454_240 Hb_001584_310 Hb_001584_310 Hb_001454_240--Hb_001584_310 Hb_011360_010 Hb_011360_010 Hb_001454_240--Hb_011360_010 Hb_000023_200 Hb_000023_200 Hb_001454_240--Hb_000023_200 Hb_004324_340 Hb_004324_340 Hb_001454_240--Hb_004324_340 Hb_173953_010 Hb_173953_010 Hb_001454_240--Hb_173953_010 Hb_000703_240 Hb_000703_240 Hb_001454_240--Hb_000703_240 Hb_001158_040 Hb_001158_040 Hb_001584_310--Hb_001158_040 Hb_006824_020 Hb_006824_020 Hb_001584_310--Hb_006824_020 Hb_006775_080 Hb_006775_080 Hb_001584_310--Hb_006775_080 Hb_001584_330 Hb_001584_330 Hb_001584_310--Hb_001584_330 Hb_034299_060 Hb_034299_060 Hb_001584_310--Hb_034299_060 Hb_002249_140 Hb_002249_140 Hb_001584_310--Hb_002249_140 Hb_000339_070 Hb_000339_070 Hb_011360_010--Hb_000339_070 Hb_000729_060 Hb_000729_060 Hb_011360_010--Hb_000729_060 Hb_005031_070 Hb_005031_070 Hb_011360_010--Hb_005031_070 Hb_048985_010 Hb_048985_010 Hb_011360_010--Hb_048985_010 Hb_007245_090 Hb_007245_090 Hb_011360_010--Hb_007245_090 Hb_005214_110 Hb_005214_110 Hb_011360_010--Hb_005214_110 Hb_054127_040 Hb_054127_040 Hb_000023_200--Hb_054127_040 Hb_000023_230 Hb_000023_230 Hb_000023_200--Hb_000023_230 Hb_004046_040 Hb_004046_040 Hb_000023_200--Hb_004046_040 Hb_001776_090 Hb_001776_090 Hb_000023_200--Hb_001776_090 Hb_000698_030 Hb_000698_030 Hb_000023_200--Hb_000698_030 Hb_002045_040 Hb_002045_040 Hb_000023_200--Hb_002045_040 Hb_004324_340--Hb_173953_010 Hb_001610_110 Hb_001610_110 Hb_004324_340--Hb_001610_110 Hb_001623_140 Hb_001623_140 Hb_004324_340--Hb_001623_140 Hb_001288_080 Hb_001288_080 Hb_004324_340--Hb_001288_080 Hb_001720_010 Hb_001720_010 Hb_004324_340--Hb_001720_010 Hb_005928_110 Hb_005928_110 Hb_004324_340--Hb_005928_110 Hb_173953_010--Hb_001610_110 Hb_000342_110 Hb_000342_110 Hb_173953_010--Hb_000342_110 Hb_009615_150 Hb_009615_150 Hb_173953_010--Hb_009615_150 Hb_000621_080 Hb_000621_080 Hb_173953_010--Hb_000621_080 Hb_173953_010--Hb_001720_010 Hb_000497_180 Hb_000497_180 Hb_000703_240--Hb_000497_180 Hb_026698_010 Hb_026698_010 Hb_000703_240--Hb_026698_010 Hb_000050_090 Hb_000050_090 Hb_000703_240--Hb_000050_090 Hb_000640_300 Hb_000640_300 Hb_000703_240--Hb_000640_300 Hb_005702_030 Hb_005702_030 Hb_000703_240--Hb_005702_030 Hb_000589_400 Hb_000589_400 Hb_000703_240--Hb_000589_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14401.5 11630.9 713.702 2004.55 13328.4 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9373.63 10691.6 5897.83 2805.12 585.596

CAGE analysis