Hb_001584_310

Information

Type -
Description -
Location Contig1584: 173691-181276
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00630g
description POPTRDRAFT_570678; hypothetical protein
nr
ID XP_002319469.1
description hypothetical protein POPTR_0013s00630g [Populus trichocarpa]
swissprot
ID O24367
description Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrhiza GN=TUR2 PE=1 SV=1
trembl
ID B9I6N2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00630g PE=4 SV=1
Gene Ontology
ID GO:0016020
description atp-binding cassette transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13994: 177769-178180 , PASA_asmbl_13996: 180471-181194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_310 0.0 - - hypothetical protein POPTR_0013s00630g [Populus trichocarpa]
2 Hb_001158_040 0.1062823995 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
3 Hb_006824_020 0.1206333118 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
4 Hb_006775_080 0.1224252525 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
5 Hb_001584_330 0.1269925792 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
6 Hb_034299_060 0.1281453836 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
7 Hb_002249_140 0.1294294682 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
8 Hb_004812_010 0.1323774652 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
9 Hb_005527_050 0.1325947413 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
10 Hb_002007_310 0.133484912 - - cyclin family protein [Populus trichocarpa]
11 Hb_003728_020 0.134544729 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002553_020 0.1356548357 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002784_050 0.1373825234 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
14 Hb_150069_020 0.1380126027 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
15 Hb_000879_140 0.1382319955 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
16 Hb_000699_130 0.1394885258 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001767_100 0.139787362 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
18 Hb_004722_060 0.1398342993 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
19 Hb_006400_040 0.1402373582 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
20 Hb_000732_260 0.1417184527 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_310 Hb_001584_310 Hb_001158_040 Hb_001158_040 Hb_001584_310--Hb_001158_040 Hb_006824_020 Hb_006824_020 Hb_001584_310--Hb_006824_020 Hb_006775_080 Hb_006775_080 Hb_001584_310--Hb_006775_080 Hb_001584_330 Hb_001584_330 Hb_001584_310--Hb_001584_330 Hb_034299_060 Hb_034299_060 Hb_001584_310--Hb_034299_060 Hb_002249_140 Hb_002249_140 Hb_001584_310--Hb_002249_140 Hb_000265_150 Hb_000265_150 Hb_001158_040--Hb_000265_150 Hb_004241_070 Hb_004241_070 Hb_001158_040--Hb_004241_070 Hb_000529_080 Hb_000529_080 Hb_001158_040--Hb_000529_080 Hb_000879_140 Hb_000879_140 Hb_001158_040--Hb_000879_140 Hb_000699_130 Hb_000699_130 Hb_001158_040--Hb_000699_130 Hb_150069_020 Hb_150069_020 Hb_001158_040--Hb_150069_020 Hb_006824_020--Hb_006775_080 Hb_001767_100 Hb_001767_100 Hb_006824_020--Hb_001767_100 Hb_000732_260 Hb_000732_260 Hb_006824_020--Hb_000732_260 Hb_021068_050 Hb_021068_050 Hb_006824_020--Hb_021068_050 Hb_000676_220 Hb_000676_220 Hb_006824_020--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_006824_020--Hb_006569_020 Hb_004012_010 Hb_004012_010 Hb_006775_080--Hb_004012_010 Hb_004920_040 Hb_004920_040 Hb_006775_080--Hb_004920_040 Hb_000056_340 Hb_000056_340 Hb_006775_080--Hb_000056_340 Hb_024835_030 Hb_024835_030 Hb_006775_080--Hb_024835_030 Hb_006775_080--Hb_021068_050 Hb_001623_420 Hb_001623_420 Hb_001584_330--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_000120_950 Hb_000120_950 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410 Hb_000429_170 Hb_000429_170 Hb_034299_060--Hb_000429_170 Hb_054127_040 Hb_054127_040 Hb_034299_060--Hb_054127_040 Hb_003151_050 Hb_003151_050 Hb_034299_060--Hb_003151_050 Hb_034299_060--Hb_006824_020 Hb_000622_040 Hb_000622_040 Hb_034299_060--Hb_000622_040 Hb_005357_150 Hb_005357_150 Hb_034299_060--Hb_005357_150 Hb_000771_110 Hb_000771_110 Hb_002249_140--Hb_000771_110 Hb_008725_250 Hb_008725_250 Hb_002249_140--Hb_008725_250 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_000481_010 Hb_000481_010 Hb_002249_140--Hb_000481_010 Hb_000784_090 Hb_000784_090 Hb_002249_140--Hb_000784_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53471 0.451474 0.217878 0.254083 1.46789 0.435844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25651 0.785481 0.755877 0.41636 0.241016

CAGE analysis