Hb_000497_180

Information

Type -
Description -
Location Contig497: 170474-171274
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12710g
description POPTRDRAFT_548132; hypothetical protein
nr
ID XP_002297893.1
description hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GMW4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12710g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_180 0.0 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
2 Hb_005843_150 0.0949788676 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
3 Hb_000237_080 0.1453628549 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
4 Hb_002813_050 0.1466051775 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
5 Hb_005843_100 0.1475161327 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
6 Hb_000703_240 0.1498209987 - - -
7 Hb_096224_040 0.1535531331 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
8 Hb_000390_150 0.1594190442 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
9 Hb_000432_040 0.1603002772 - - PREDICTED: remorin-like [Jatropha curcas]
10 Hb_002435_110 0.1644528802 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
11 Hb_001195_680 0.1653619878 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
12 Hb_022250_090 0.1653821472 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
13 Hb_000457_170 0.1672634728 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
14 Hb_009701_010 0.1690587595 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
15 Hb_027506_020 0.1713447838 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
16 Hb_004785_060 0.1751881832 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
17 Hb_003376_350 0.1752458975 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
18 Hb_004705_140 0.1759003108 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
19 Hb_000016_100 0.1770874031 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
20 Hb_000926_330 0.178100441 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000497_180 Hb_000497_180 Hb_005843_150 Hb_005843_150 Hb_000497_180--Hb_005843_150 Hb_000237_080 Hb_000237_080 Hb_000497_180--Hb_000237_080 Hb_002813_050 Hb_002813_050 Hb_000497_180--Hb_002813_050 Hb_005843_100 Hb_005843_100 Hb_000497_180--Hb_005843_100 Hb_000703_240 Hb_000703_240 Hb_000497_180--Hb_000703_240 Hb_096224_040 Hb_096224_040 Hb_000497_180--Hb_096224_040 Hb_005843_150--Hb_005843_100 Hb_005843_150--Hb_096224_040 Hb_005843_150--Hb_000237_080 Hb_005843_150--Hb_002813_050 Hb_001318_030 Hb_001318_030 Hb_005843_150--Hb_001318_030 Hb_000237_080--Hb_001318_030 Hb_004785_060 Hb_004785_060 Hb_000237_080--Hb_004785_060 Hb_009615_150 Hb_009615_150 Hb_000237_080--Hb_009615_150 Hb_000237_080--Hb_002813_050 Hb_005147_090 Hb_005147_090 Hb_000237_080--Hb_005147_090 Hb_000859_060 Hb_000859_060 Hb_000237_080--Hb_000859_060 Hb_000000_370 Hb_000000_370 Hb_002813_050--Hb_000000_370 Hb_002813_050--Hb_000859_060 Hb_002813_050--Hb_004785_060 Hb_012395_220 Hb_012395_220 Hb_002813_050--Hb_012395_220 Hb_001141_390 Hb_001141_390 Hb_002813_050--Hb_001141_390 Hb_012807_050 Hb_012807_050 Hb_002813_050--Hb_012807_050 Hb_005843_100--Hb_002813_050 Hb_005843_100--Hb_001318_030 Hb_005843_100--Hb_096224_040 Hb_005843_100--Hb_012395_220 Hb_002374_310 Hb_002374_310 Hb_005843_100--Hb_002374_310 Hb_026698_010 Hb_026698_010 Hb_000703_240--Hb_026698_010 Hb_000050_090 Hb_000050_090 Hb_000703_240--Hb_000050_090 Hb_000640_300 Hb_000640_300 Hb_000703_240--Hb_000640_300 Hb_005702_030 Hb_005702_030 Hb_000703_240--Hb_005702_030 Hb_000589_400 Hb_000589_400 Hb_000703_240--Hb_000589_400 Hb_027506_020 Hb_027506_020 Hb_096224_040--Hb_027506_020 Hb_096224_040--Hb_001141_390 Hb_096224_040--Hb_002813_050 Hb_000665_010 Hb_000665_010 Hb_096224_040--Hb_000665_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3835 34.4957 1.18599 4.68054 20.1168 7.90831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9429 17.3233 27.6019 15.2881 2.76529

CAGE analysis