Hb_001935_210

Information

Type -
Description -
Location Contig1935: 192870-200578
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_210 0.0 - - -
2 Hb_040991_010 0.1896244022 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_000832_330 0.2474021386 - - PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
4 Hb_001414_130 0.3335006985 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
5 Hb_059924_010 0.3410057238 - - -
6 Hb_001811_010 0.3412397102 - - -
7 Hb_004330_030 0.3441223032 - - -
8 Hb_000025_550 0.3549352463 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003405_040 0.3551878103 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
10 Hb_000457_040 0.3580038254 - - -
11 Hb_002185_010 0.3621272444 - - PREDICTED: uncharacterized protein LOC105795658 [Gossypium raimondii]
12 Hb_094101_010 0.368493712 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
13 Hb_161994_020 0.3703165287 - - -
14 Hb_018118_040 0.3763506865 - - -
15 Hb_000525_060 0.3771176751 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
16 Hb_045370_010 0.3796927836 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000078_050 0.3854825459 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
18 Hb_103452_020 0.3870342857 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
19 Hb_001558_090 0.3897263547 - - -
20 Hb_000237_130 0.3921254027 - - -

Gene co-expression network

sample Hb_001935_210 Hb_001935_210 Hb_040991_010 Hb_040991_010 Hb_001935_210--Hb_040991_010 Hb_000832_330 Hb_000832_330 Hb_001935_210--Hb_000832_330 Hb_001414_130 Hb_001414_130 Hb_001935_210--Hb_001414_130 Hb_059924_010 Hb_059924_010 Hb_001935_210--Hb_059924_010 Hb_001811_010 Hb_001811_010 Hb_001935_210--Hb_001811_010 Hb_004330_030 Hb_004330_030 Hb_001935_210--Hb_004330_030 Hb_040991_010--Hb_059924_010 Hb_000525_060 Hb_000525_060 Hb_040991_010--Hb_000525_060 Hb_001773_020 Hb_001773_020 Hb_040991_010--Hb_001773_020 Hb_008507_050 Hb_008507_050 Hb_040991_010--Hb_008507_050 Hb_010603_030 Hb_010603_030 Hb_040991_010--Hb_010603_030 Hb_003405_040 Hb_003405_040 Hb_000832_330--Hb_003405_040 Hb_000832_330--Hb_001414_130 Hb_018118_040 Hb_018118_040 Hb_000832_330--Hb_018118_040 Hb_000025_550 Hb_000025_550 Hb_000832_330--Hb_000025_550 Hb_118346_010 Hb_118346_010 Hb_000832_330--Hb_118346_010 Hb_094101_010 Hb_094101_010 Hb_001414_130--Hb_094101_010 Hb_003311_050 Hb_003311_050 Hb_001414_130--Hb_003311_050 Hb_005269_030 Hb_005269_030 Hb_001414_130--Hb_005269_030 Hb_004088_060 Hb_004088_060 Hb_001414_130--Hb_004088_060 Hb_001414_130--Hb_018118_040 Hb_103452_020 Hb_103452_020 Hb_059924_010--Hb_103452_020 Hb_006045_060 Hb_006045_060 Hb_059924_010--Hb_006045_060 Hb_000721_020 Hb_000721_020 Hb_059924_010--Hb_000721_020 Hb_007547_050 Hb_007547_050 Hb_059924_010--Hb_007547_050 Hb_001454_240 Hb_001454_240 Hb_001811_010--Hb_001454_240 Hb_004631_220 Hb_004631_220 Hb_001811_010--Hb_004631_220 Hb_055773_010 Hb_055773_010 Hb_001811_010--Hb_055773_010 Hb_000050_090 Hb_000050_090 Hb_001811_010--Hb_000050_090 Hb_000140_150 Hb_000140_150 Hb_001811_010--Hb_000140_150 Hb_001944_030 Hb_001944_030 Hb_004330_030--Hb_001944_030 Hb_000146_060 Hb_000146_060 Hb_004330_030--Hb_000146_060 Hb_001214_170 Hb_001214_170 Hb_004330_030--Hb_001214_170 Hb_005608_010 Hb_005608_010 Hb_004330_030--Hb_005608_010 Hb_007805_020 Hb_007805_020 Hb_004330_030--Hb_007805_020 Hb_004330_030--Hb_118346_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0659697 0.0575685 0.0151865 0 0.158913 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0730745 0 0.0440084 0

CAGE analysis