Hb_000525_060

Information

Type -
Description -
Location Contig525: 104014-122428
Sequence    

Annotation

kegg
ID cam:101505720
description uncharacterized LOC101505720
nr
ID XP_009758648.1
description PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000525_060 0.0 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
2 Hb_001493_110 0.2245772843 - - hypothetical protein JCGZ_24625 [Jatropha curcas]
3 Hb_000088_030 0.2476568813 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
4 Hb_000608_040 0.2685298074 - - -
5 Hb_004324_020 0.2856929409 - - -
6 Hb_003125_140 0.2956686166 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
7 Hb_005535_060 0.2978519578 - - -
8 Hb_000580_130 0.2980292862 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
9 Hb_107281_010 0.3005092446 - - protein with unknown function [Ricinus communis]
10 Hb_000424_160 0.3005603782 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
11 Hb_002483_020 0.3038768085 - - -
12 Hb_004230_030 0.3044260491 - - hypothetical protein CISIN_1g043871mg [Citrus sinensis]
13 Hb_000318_260 0.3047871306 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
14 Hb_040991_010 0.3048269422 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_085375_010 0.3098812868 - - protein with unknown function [Ricinus communis]
16 Hb_001944_030 0.3125095849 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
17 Hb_140595_010 0.3134152334 - - -
18 Hb_007645_120 0.3171885995 - - hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
19 Hb_173902_040 0.3189377601 - - -
20 Hb_010603_030 0.3230631105 - - -

Gene co-expression network

sample Hb_000525_060 Hb_000525_060 Hb_001493_110 Hb_001493_110 Hb_000525_060--Hb_001493_110 Hb_000088_030 Hb_000088_030 Hb_000525_060--Hb_000088_030 Hb_000608_040 Hb_000608_040 Hb_000525_060--Hb_000608_040 Hb_004324_020 Hb_004324_020 Hb_000525_060--Hb_004324_020 Hb_003125_140 Hb_003125_140 Hb_000525_060--Hb_003125_140 Hb_005535_060 Hb_005535_060 Hb_000525_060--Hb_005535_060 Hb_000521_140 Hb_000521_140 Hb_001493_110--Hb_000521_140 Hb_006096_040 Hb_006096_040 Hb_001493_110--Hb_006096_040 Hb_001810_030 Hb_001810_030 Hb_001493_110--Hb_001810_030 Hb_173902_040 Hb_173902_040 Hb_001493_110--Hb_173902_040 Hb_003751_060 Hb_003751_060 Hb_001493_110--Hb_003751_060 Hb_140595_010 Hb_140595_010 Hb_000088_030--Hb_140595_010 Hb_000318_260 Hb_000318_260 Hb_000088_030--Hb_000318_260 Hb_002903_120 Hb_002903_120 Hb_000088_030--Hb_002903_120 Hb_002483_020 Hb_002483_020 Hb_000088_030--Hb_002483_020 Hb_045502_010 Hb_045502_010 Hb_000088_030--Hb_045502_010 Hb_000580_130 Hb_000580_130 Hb_000088_030--Hb_000580_130 Hb_000608_040--Hb_005535_060 Hb_001703_130 Hb_001703_130 Hb_000608_040--Hb_001703_130 Hb_012184_050 Hb_012184_050 Hb_000608_040--Hb_012184_050 Hb_000608_040--Hb_000580_130 Hb_002805_170 Hb_002805_170 Hb_000608_040--Hb_002805_170 Hb_001922_130 Hb_001922_130 Hb_000608_040--Hb_001922_130 Hb_004048_140 Hb_004048_140 Hb_004324_020--Hb_004048_140 Hb_000012_180 Hb_000012_180 Hb_004324_020--Hb_000012_180 Hb_116195_010 Hb_116195_010 Hb_004324_020--Hb_116195_010 Hb_080083_010 Hb_080083_010 Hb_004324_020--Hb_080083_010 Hb_000525_040 Hb_000525_040 Hb_004324_020--Hb_000525_040 Hb_017417_010 Hb_017417_010 Hb_004324_020--Hb_017417_010 Hb_003125_140--Hb_000580_130 Hb_007645_120 Hb_007645_120 Hb_003125_140--Hb_007645_120 Hb_000120_570 Hb_000120_570 Hb_003125_140--Hb_000120_570 Hb_156144_030 Hb_156144_030 Hb_003125_140--Hb_156144_030 Hb_000265_220 Hb_000265_220 Hb_003125_140--Hb_000265_220 Hb_002965_030 Hb_002965_030 Hb_003125_140--Hb_002965_030 Hb_005535_060--Hb_001703_130 Hb_005535_060--Hb_002805_170 Hb_005535_060--Hb_012184_050 Hb_001473_190 Hb_001473_190 Hb_005535_060--Hb_001473_190 Hb_063409_020 Hb_063409_020 Hb_005535_060--Hb_063409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0730346 0.0220363 0.0918579 0 0.218916 0.0116719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0303214 0.023855 0 0.0190373 0

CAGE analysis