Hb_007645_120

Information

Type -
Description -
Location Contig7645: 122770-124114
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05370g
description POPTRDRAFT_560548; hypothetical protein
nr
ID XP_002308968.2
description hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HA66
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05370g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57400: 123250-123798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007645_120 0.0 - - hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
2 Hb_003125_140 0.1596419361 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
3 Hb_156144_030 0.174492901 - - hypothetical protein RCOM_0187400 [Ricinus communis]
4 Hb_000120_570 0.1826404466 - - Mlo protein [Hevea brasiliensis]
5 Hb_102129_070 0.1852248761 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
6 Hb_000453_140 0.1858145756 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
7 Hb_006831_100 0.185832894 - - snRNA-activating protein complex subunit, putative [Ricinus communis]
8 Hb_001807_030 0.1870393467 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
9 Hb_001001_020 0.1883052383 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
10 Hb_003388_050 0.1889808438 - - -
11 Hb_018790_070 0.1894641754 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
12 Hb_005803_010 0.1916529117 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_001473_080 0.1919111475 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
14 Hb_031527_070 0.192801406 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
15 Hb_005539_190 0.1940321903 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
16 Hb_002947_040 0.1950434943 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
17 Hb_001051_090 0.1958702038 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
18 Hb_000265_220 0.1964508001 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
19 Hb_027380_030 0.1965719924 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
20 Hb_000953_030 0.196793785 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007645_120 Hb_007645_120 Hb_003125_140 Hb_003125_140 Hb_007645_120--Hb_003125_140 Hb_156144_030 Hb_156144_030 Hb_007645_120--Hb_156144_030 Hb_000120_570 Hb_000120_570 Hb_007645_120--Hb_000120_570 Hb_102129_070 Hb_102129_070 Hb_007645_120--Hb_102129_070 Hb_000453_140 Hb_000453_140 Hb_007645_120--Hb_000453_140 Hb_006831_100 Hb_006831_100 Hb_007645_120--Hb_006831_100 Hb_000580_130 Hb_000580_130 Hb_003125_140--Hb_000580_130 Hb_003125_140--Hb_000120_570 Hb_003125_140--Hb_156144_030 Hb_000265_220 Hb_000265_220 Hb_003125_140--Hb_000265_220 Hb_002965_030 Hb_002965_030 Hb_003125_140--Hb_002965_030 Hb_007951_100 Hb_007951_100 Hb_156144_030--Hb_007951_100 Hb_000953_030 Hb_000953_030 Hb_156144_030--Hb_000953_030 Hb_001946_240 Hb_001946_240 Hb_156144_030--Hb_001946_240 Hb_000920_280 Hb_000920_280 Hb_156144_030--Hb_000920_280 Hb_000359_330 Hb_000359_330 Hb_156144_030--Hb_000359_330 Hb_001473_080 Hb_001473_080 Hb_156144_030--Hb_001473_080 Hb_000120_570--Hb_001473_080 Hb_001922_130 Hb_001922_130 Hb_000120_570--Hb_001922_130 Hb_001534_070 Hb_001534_070 Hb_000120_570--Hb_001534_070 Hb_009178_020 Hb_009178_020 Hb_000120_570--Hb_009178_020 Hb_000685_080 Hb_000685_080 Hb_000120_570--Hb_000685_080 Hb_004374_150 Hb_004374_150 Hb_000120_570--Hb_004374_150 Hb_003126_030 Hb_003126_030 Hb_102129_070--Hb_003126_030 Hb_008554_120 Hb_008554_120 Hb_102129_070--Hb_008554_120 Hb_000820_120 Hb_000820_120 Hb_102129_070--Hb_000820_120 Hb_005539_190 Hb_005539_190 Hb_102129_070--Hb_005539_190 Hb_001083_030 Hb_001083_030 Hb_102129_070--Hb_001083_030 Hb_102129_070--Hb_000953_030 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_027380_030 Hb_027380_030 Hb_000453_140--Hb_027380_030 Hb_002896_060 Hb_002896_060 Hb_000453_140--Hb_002896_060 Hb_002092_100 Hb_002092_100 Hb_000453_140--Hb_002092_100 Hb_000076_260 Hb_000076_260 Hb_000453_140--Hb_000076_260 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010 Hb_001807_030 Hb_001807_030 Hb_006831_100--Hb_001807_030 Hb_005803_010 Hb_005803_010 Hb_006831_100--Hb_005803_010 Hb_007765_060 Hb_007765_060 Hb_006831_100--Hb_007765_060 Hb_001001_020 Hb_001001_020 Hb_006831_100--Hb_001001_020 Hb_001160_120 Hb_001160_120 Hb_006831_100--Hb_001160_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7789 7.28518 8.62198 5.16626 21.3814 4.68417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27842 2.25805 2.85202 6.38716 0.221258

CAGE analysis