Hb_003125_140

Information

Type -
Description -
Location Contig3125: 110148-111869
Sequence    

Annotation

kegg
ID rcu:RCOM_1506010
description hypothetical protein
nr
ID XP_012090696.1
description PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
swissprot
ID Q8IU29
description Molybdenum cofactor sulfurase OS=Bombyx mori GN=mal PE=2 SV=1
trembl
ID B9RAF2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506010 PE=4 SV=1
Gene Ontology
ID GO:0003824
description pyridoxal phosphate-dependent transferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33054: 111504-111991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_140 0.0 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
2 Hb_000580_130 0.141259969 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
3 Hb_007645_120 0.1596419361 - - hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
4 Hb_000120_570 0.1597452143 - - Mlo protein [Hevea brasiliensis]
5 Hb_156144_030 0.1622497392 - - hypothetical protein RCOM_0187400 [Ricinus communis]
6 Hb_000265_220 0.1690705882 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_002965_030 0.1790836463 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
8 Hb_004376_030 0.1791411798 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
9 Hb_085375_010 0.1831984409 - - protein with unknown function [Ricinus communis]
10 Hb_001922_130 0.1841665165 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
11 Hb_001473_080 0.1882054587 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
12 Hb_001534_070 0.1903173763 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
13 Hb_001051_090 0.1909831844 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
14 Hb_002896_060 0.191220159 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
15 Hb_003688_200 0.1942017163 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000453_140 0.1948290193 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
17 Hb_013394_060 0.1954236834 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
18 Hb_002267_090 0.1957319719 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
19 Hb_000720_070 0.1974314333 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
20 Hb_140595_010 0.1976714918 - - -

Gene co-expression network

sample Hb_003125_140 Hb_003125_140 Hb_000580_130 Hb_000580_130 Hb_003125_140--Hb_000580_130 Hb_007645_120 Hb_007645_120 Hb_003125_140--Hb_007645_120 Hb_000120_570 Hb_000120_570 Hb_003125_140--Hb_000120_570 Hb_156144_030 Hb_156144_030 Hb_003125_140--Hb_156144_030 Hb_000265_220 Hb_000265_220 Hb_003125_140--Hb_000265_220 Hb_002965_030 Hb_002965_030 Hb_003125_140--Hb_002965_030 Hb_000580_130--Hb_000120_570 Hb_001534_070 Hb_001534_070 Hb_000580_130--Hb_001534_070 Hb_001922_130 Hb_001922_130 Hb_000580_130--Hb_001922_130 Hb_001703_130 Hb_001703_130 Hb_000580_130--Hb_001703_130 Hb_063409_020 Hb_063409_020 Hb_000580_130--Hb_063409_020 Hb_007645_120--Hb_156144_030 Hb_007645_120--Hb_000120_570 Hb_102129_070 Hb_102129_070 Hb_007645_120--Hb_102129_070 Hb_000453_140 Hb_000453_140 Hb_007645_120--Hb_000453_140 Hb_006831_100 Hb_006831_100 Hb_007645_120--Hb_006831_100 Hb_001473_080 Hb_001473_080 Hb_000120_570--Hb_001473_080 Hb_000120_570--Hb_001922_130 Hb_000120_570--Hb_001534_070 Hb_009178_020 Hb_009178_020 Hb_000120_570--Hb_009178_020 Hb_000685_080 Hb_000685_080 Hb_000120_570--Hb_000685_080 Hb_004374_150 Hb_004374_150 Hb_000120_570--Hb_004374_150 Hb_007951_100 Hb_007951_100 Hb_156144_030--Hb_007951_100 Hb_000953_030 Hb_000953_030 Hb_156144_030--Hb_000953_030 Hb_001946_240 Hb_001946_240 Hb_156144_030--Hb_001946_240 Hb_000920_280 Hb_000920_280 Hb_156144_030--Hb_000920_280 Hb_000359_330 Hb_000359_330 Hb_156144_030--Hb_000359_330 Hb_156144_030--Hb_001473_080 Hb_000809_210 Hb_000809_210 Hb_000265_220--Hb_000809_210 Hb_002896_060 Hb_002896_060 Hb_000265_220--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_000265_220--Hb_027380_030 Hb_011915_010 Hb_011915_010 Hb_000265_220--Hb_011915_010 Hb_000265_220--Hb_000453_140 Hb_002681_170 Hb_002681_170 Hb_000265_220--Hb_002681_170 Hb_000735_100 Hb_000735_100 Hb_002965_030--Hb_000735_100 Hb_000720_070 Hb_000720_070 Hb_002965_030--Hb_000720_070 Hb_013394_060 Hb_013394_060 Hb_002965_030--Hb_013394_060 Hb_002965_030--Hb_002896_060 Hb_002999_060 Hb_002999_060 Hb_002965_030--Hb_002999_060 Hb_002965_030--Hb_001946_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0469 1.85019 1.99167 1.13925 6.35146 1.97947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.566487 0.668345 0.137184 0.745595 0.152521

CAGE analysis