Hb_173902_040

Information

Type -
Description -
Location Contig173902: 16435-17435
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173902_040 0.0 - - -
2 Hb_001493_110 0.2172503533 - - hypothetical protein JCGZ_24625 [Jatropha curcas]
3 Hb_003702_040 0.2212799617 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
4 Hb_006096_040 0.2500576274 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
5 Hb_001519_180 0.2663741256 - - Squalene monooxygenase, putative [Ricinus communis]
6 Hb_005545_030 0.2698446579 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
7 Hb_000789_100 0.2727761731 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
8 Hb_004046_040 0.2728477345 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
9 Hb_019516_020 0.2750667294 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004324_020 0.2761268243 - - -
11 Hb_024505_020 0.2792295777 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
12 Hb_003050_110 0.2833379059 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
13 Hb_000705_300 0.2852671576 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
14 Hb_000088_210 0.2880020914 - - hypothetical protein POPTR_0013s11310g [Populus trichocarpa]
15 Hb_000099_230 0.2894494552 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
16 Hb_000001_110 0.2903224502 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000933_150 0.2943543653 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
18 Hb_006634_040 0.2957945636 - - hypothetical protein VITISV_030841 [Vitis vinifera]
19 Hb_000307_170 0.2958261426 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
20 Hb_004048_140 0.297142021 - - -

Gene co-expression network

sample Hb_173902_040 Hb_173902_040 Hb_001493_110 Hb_001493_110 Hb_173902_040--Hb_001493_110 Hb_003702_040 Hb_003702_040 Hb_173902_040--Hb_003702_040 Hb_006096_040 Hb_006096_040 Hb_173902_040--Hb_006096_040 Hb_001519_180 Hb_001519_180 Hb_173902_040--Hb_001519_180 Hb_005545_030 Hb_005545_030 Hb_173902_040--Hb_005545_030 Hb_000789_100 Hb_000789_100 Hb_173902_040--Hb_000789_100 Hb_000521_140 Hb_000521_140 Hb_001493_110--Hb_000521_140 Hb_001493_110--Hb_006096_040 Hb_001810_030 Hb_001810_030 Hb_001493_110--Hb_001810_030 Hb_003751_060 Hb_003751_060 Hb_001493_110--Hb_003751_060 Hb_000525_060 Hb_000525_060 Hb_001493_110--Hb_000525_060 Hb_000001_110 Hb_000001_110 Hb_003702_040--Hb_000001_110 Hb_003702_040--Hb_000789_100 Hb_000933_150 Hb_000933_150 Hb_003702_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_003702_040--Hb_000676_050 Hb_000003_650 Hb_000003_650 Hb_003702_040--Hb_000003_650 Hb_003702_040--Hb_006096_040 Hb_004046_040 Hb_004046_040 Hb_006096_040--Hb_004046_040 Hb_006096_040--Hb_000933_150 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_000482_110 Hb_000482_110 Hb_006096_040--Hb_000482_110 Hb_000331_290 Hb_000331_290 Hb_006096_040--Hb_000331_290 Hb_000012_180 Hb_000012_180 Hb_001519_180--Hb_000012_180 Hb_005590_030 Hb_005590_030 Hb_001519_180--Hb_005590_030 Hb_003018_110 Hb_003018_110 Hb_001519_180--Hb_003018_110 Hb_012867_010 Hb_012867_010 Hb_001519_180--Hb_012867_010 Hb_024505_020 Hb_024505_020 Hb_001519_180--Hb_024505_020 Hb_003849_080 Hb_003849_080 Hb_001519_180--Hb_003849_080 Hb_002681_040 Hb_002681_040 Hb_005545_030--Hb_002681_040 Hb_005545_030--Hb_004046_040 Hb_005545_030--Hb_003018_110 Hb_006452_190 Hb_006452_190 Hb_005545_030--Hb_006452_190 Hb_005545_030--Hb_006096_040 Hb_001405_050 Hb_001405_050 Hb_005545_030--Hb_001405_050 Hb_000297_110 Hb_000297_110 Hb_000789_100--Hb_000297_110 Hb_010968_010 Hb_010968_010 Hb_000789_100--Hb_010968_010 Hb_000920_280 Hb_000920_280 Hb_000789_100--Hb_000920_280 Hb_001484_060 Hb_001484_060 Hb_000789_100--Hb_001484_060 Hb_000789_100--Hb_000676_050 Hb_000789_100--Hb_000482_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.3064 6.14039 74.41 12.4717 89.9353 10.2471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.9196 38.5578 0.621006 0.628782 2.71687

CAGE analysis