Hb_001493_110

Information

Type -
Description -
Location Contig1493: 76167-76953
Sequence    

Annotation

kegg
ID rcu:RCOM_0333710
description Protein C14orf21, putative
nr
ID KDP40626.1
description hypothetical protein JCGZ_24625 [Jatropha curcas]
swissprot
ID Q9C552
description Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1
trembl
ID A0A067KWN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24625 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_110 0.0 - - hypothetical protein JCGZ_24625 [Jatropha curcas]
2 Hb_000521_140 0.2082286605 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
3 Hb_006096_040 0.2095976656 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
4 Hb_001810_030 0.2118753377 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
5 Hb_173902_040 0.2172503533 - - -
6 Hb_003751_060 0.2186580954 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
7 Hb_000525_060 0.2245772843 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
8 Hb_000933_150 0.2245843284 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
9 Hb_001019_200 0.2319521538 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
10 Hb_004046_040 0.2383636472 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
11 Hb_001352_090 0.2387081429 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
12 Hb_005529_010 0.2416102671 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000608_040 0.2422855211 - - -
14 Hb_006634_040 0.2431810695 - - hypothetical protein VITISV_030841 [Vitis vinifera]
15 Hb_003682_050 0.2456991822 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
16 Hb_000042_210 0.2467199524 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
17 Hb_000920_280 0.2469146572 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
18 Hb_003702_040 0.2489012818 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
19 Hb_002947_040 0.2496169157 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
20 Hb_002687_140 0.2498914175 - - hypothetical protein JCGZ_24463 [Jatropha curcas]

Gene co-expression network

sample Hb_001493_110 Hb_001493_110 Hb_000521_140 Hb_000521_140 Hb_001493_110--Hb_000521_140 Hb_006096_040 Hb_006096_040 Hb_001493_110--Hb_006096_040 Hb_001810_030 Hb_001810_030 Hb_001493_110--Hb_001810_030 Hb_173902_040 Hb_173902_040 Hb_001493_110--Hb_173902_040 Hb_003751_060 Hb_003751_060 Hb_001493_110--Hb_003751_060 Hb_000525_060 Hb_000525_060 Hb_001493_110--Hb_000525_060 Hb_003682_050 Hb_003682_050 Hb_000521_140--Hb_003682_050 Hb_002026_140 Hb_002026_140 Hb_000521_140--Hb_002026_140 Hb_001195_040 Hb_001195_040 Hb_000521_140--Hb_001195_040 Hb_002681_060 Hb_002681_060 Hb_000521_140--Hb_002681_060 Hb_000836_430 Hb_000836_430 Hb_000521_140--Hb_000836_430 Hb_002947_040 Hb_002947_040 Hb_000521_140--Hb_002947_040 Hb_004046_040 Hb_004046_040 Hb_006096_040--Hb_004046_040 Hb_000933_150 Hb_000933_150 Hb_006096_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_000482_110 Hb_000482_110 Hb_006096_040--Hb_000482_110 Hb_000331_290 Hb_000331_290 Hb_006096_040--Hb_000331_290 Hb_030565_080 Hb_030565_080 Hb_001810_030--Hb_030565_080 Hb_000265_240 Hb_000265_240 Hb_001810_030--Hb_000265_240 Hb_002316_130 Hb_002316_130 Hb_001810_030--Hb_002316_130 Hb_001564_130 Hb_001564_130 Hb_001810_030--Hb_001564_130 Hb_030928_040 Hb_030928_040 Hb_001810_030--Hb_030928_040 Hb_003292_040 Hb_003292_040 Hb_001810_030--Hb_003292_040 Hb_003702_040 Hb_003702_040 Hb_173902_040--Hb_003702_040 Hb_173902_040--Hb_006096_040 Hb_001519_180 Hb_001519_180 Hb_173902_040--Hb_001519_180 Hb_005545_030 Hb_005545_030 Hb_173902_040--Hb_005545_030 Hb_000789_100 Hb_000789_100 Hb_173902_040--Hb_000789_100 Hb_004512_020 Hb_004512_020 Hb_003751_060--Hb_004512_020 Hb_035947_010 Hb_035947_010 Hb_003751_060--Hb_035947_010 Hb_001754_240 Hb_001754_240 Hb_003751_060--Hb_001754_240 Hb_003097_190 Hb_003097_190 Hb_003751_060--Hb_003097_190 Hb_003751_060--Hb_000933_150 Hb_002387_020 Hb_002387_020 Hb_003751_060--Hb_002387_020 Hb_000088_030 Hb_000088_030 Hb_000525_060--Hb_000088_030 Hb_000608_040 Hb_000608_040 Hb_000525_060--Hb_000608_040 Hb_004324_020 Hb_004324_020 Hb_000525_060--Hb_004324_020 Hb_003125_140 Hb_003125_140 Hb_000525_060--Hb_003125_140 Hb_005535_060 Hb_005535_060 Hb_000525_060--Hb_005535_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.5138 3.23071 9.8516 1.07723 21.1974 1.13086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.38656 5.47152 1.69008 1.58366 0.828386

CAGE analysis