Hb_000521_140

Information

Type -
Description -
Location Contig521: 83254-84240
Sequence    

Annotation

kegg
ID mdm:103416251
description putative ribonuclease H protein At1g65750
nr
ID XP_008352730.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
swissprot
ID -
description -
trembl
ID M5WEH8
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019056mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46706: 82527-83398 , PASA_asmbl_46707: 83420-83811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_140 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
2 Hb_003682_050 0.1388482774 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
3 Hb_002026_140 0.14287901 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
4 Hb_001195_040 0.1430564393 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
5 Hb_002681_060 0.143912 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
6 Hb_000836_430 0.1523141678 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
7 Hb_002947_040 0.152632517 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
8 Hb_000130_380 0.1653601359 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
9 Hb_063805_010 0.1709863586 - - -
10 Hb_000477_030 0.1716745356 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
11 Hb_009252_100 0.1723455903 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
12 Hb_014720_170 0.172407857 - - glutaredoxin-1, grx1, putative [Ricinus communis]
13 Hb_003751_060 0.1735320272 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
14 Hb_001926_040 0.1735957193 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
15 Hb_003142_070 0.1740494009 - - hypothetical protein F383_14657 [Gossypium arboreum]
16 Hb_001934_030 0.1745521139 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
17 Hb_008112_040 0.1748965777 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
18 Hb_005511_170 0.1750514734 - - hypothetical protein CISIN_1g030718mg [Citrus sinensis]
19 Hb_000407_040 0.1757926767 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
20 Hb_002292_010 0.176875081 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]

Gene co-expression network

sample Hb_000521_140 Hb_000521_140 Hb_003682_050 Hb_003682_050 Hb_000521_140--Hb_003682_050 Hb_002026_140 Hb_002026_140 Hb_000521_140--Hb_002026_140 Hb_001195_040 Hb_001195_040 Hb_000521_140--Hb_001195_040 Hb_002681_060 Hb_002681_060 Hb_000521_140--Hb_002681_060 Hb_000836_430 Hb_000836_430 Hb_000521_140--Hb_000836_430 Hb_002947_040 Hb_002947_040 Hb_000521_140--Hb_002947_040 Hb_027380_160 Hb_027380_160 Hb_003682_050--Hb_027380_160 Hb_001926_040 Hb_001926_040 Hb_003682_050--Hb_001926_040 Hb_000085_240 Hb_000085_240 Hb_003682_050--Hb_000085_240 Hb_000001_110 Hb_000001_110 Hb_003682_050--Hb_000001_110 Hb_002687_140 Hb_002687_140 Hb_003682_050--Hb_002687_140 Hb_000359_330 Hb_000359_330 Hb_002026_140--Hb_000359_330 Hb_002639_150 Hb_002639_150 Hb_002026_140--Hb_002639_150 Hb_002292_010 Hb_002292_010 Hb_002026_140--Hb_002292_010 Hb_002157_260 Hb_002157_260 Hb_002026_140--Hb_002157_260 Hb_000261_250 Hb_000261_250 Hb_002026_140--Hb_000261_250 Hb_003142_070 Hb_003142_070 Hb_002026_140--Hb_003142_070 Hb_000661_140 Hb_000661_140 Hb_001195_040--Hb_000661_140 Hb_001195_040--Hb_002639_150 Hb_000853_430 Hb_000853_430 Hb_001195_040--Hb_000853_430 Hb_000926_310 Hb_000926_310 Hb_001195_040--Hb_000926_310 Hb_001934_030 Hb_001934_030 Hb_001195_040--Hb_001934_030 Hb_000003_600 Hb_000003_600 Hb_001195_040--Hb_000003_600 Hb_000407_040 Hb_000407_040 Hb_002681_060--Hb_000407_040 Hb_000130_380 Hb_000130_380 Hb_002681_060--Hb_000130_380 Hb_000061_470 Hb_000061_470 Hb_002681_060--Hb_000061_470 Hb_001477_070 Hb_001477_070 Hb_002681_060--Hb_001477_070 Hb_000059_340 Hb_000059_340 Hb_002681_060--Hb_000059_340 Hb_000010_240 Hb_000010_240 Hb_002681_060--Hb_000010_240 Hb_000836_430--Hb_000661_140 Hb_000836_430--Hb_002026_140 Hb_003621_020 Hb_003621_020 Hb_000836_430--Hb_003621_020 Hb_004128_200 Hb_004128_200 Hb_000836_430--Hb_004128_200 Hb_000958_130 Hb_000958_130 Hb_000836_430--Hb_000958_130 Hb_001898_240 Hb_001898_240 Hb_000836_430--Hb_001898_240 Hb_002947_040--Hb_002157_260 Hb_001040_040 Hb_001040_040 Hb_002947_040--Hb_001040_040 Hb_007951_100 Hb_007951_100 Hb_002947_040--Hb_007951_100 Hb_000563_330 Hb_000563_330 Hb_002947_040--Hb_000563_330 Hb_005188_060 Hb_005188_060 Hb_002947_040--Hb_005188_060 Hb_009252_100 Hb_009252_100 Hb_002947_040--Hb_009252_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33563 0.880847 1.49574 0.218541 1.75187 0.437477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.723684 0.831809 0.801642 0.211675 0.0890563

CAGE analysis