Hb_027380_160

Information

Type -
Description -
Location Contig27380: 138922-140419
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_160 0.0 - - -
2 Hb_003682_050 0.1160961748 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
3 Hb_063100_010 0.1283588872 - - TATA box-binding protein-associated factor [Populus trichocarpa]
4 Hb_001926_040 0.1349051545 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
5 Hb_024399_010 0.135978513 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
6 Hb_011716_040 0.139405374 - - -
7 Hb_000340_010 0.1428248597 - - -
8 Hb_096962_020 0.1465627149 - - -
9 Hb_000684_300 0.1473236253 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
10 Hb_005714_040 0.1485290248 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005389_140 0.1486274133 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
12 Hb_000481_010 0.1508705762 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
13 Hb_002026_110 0.1530010579 - - protein binding protein, putative [Ricinus communis]
14 Hb_002783_230 0.1558758432 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_004241_070 0.1560997686 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
16 Hb_005314_010 0.1579034791 - - nucleotide binding protein, putative [Ricinus communis]
17 Hb_004117_030 0.1622890044 - - PREDICTED: uncharacterized protein LOC104449809 [Eucalyptus grandis]
18 Hb_103624_010 0.1632811947 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
19 Hb_000340_510 0.1647348224 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
20 Hb_017168_010 0.1653217658 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_027380_160 Hb_027380_160 Hb_003682_050 Hb_003682_050 Hb_027380_160--Hb_003682_050 Hb_063100_010 Hb_063100_010 Hb_027380_160--Hb_063100_010 Hb_001926_040 Hb_001926_040 Hb_027380_160--Hb_001926_040 Hb_024399_010 Hb_024399_010 Hb_027380_160--Hb_024399_010 Hb_011716_040 Hb_011716_040 Hb_027380_160--Hb_011716_040 Hb_000340_010 Hb_000340_010 Hb_027380_160--Hb_000340_010 Hb_003682_050--Hb_001926_040 Hb_000521_140 Hb_000521_140 Hb_003682_050--Hb_000521_140 Hb_000085_240 Hb_000085_240 Hb_003682_050--Hb_000085_240 Hb_000001_110 Hb_000001_110 Hb_003682_050--Hb_000001_110 Hb_002687_140 Hb_002687_140 Hb_003682_050--Hb_002687_140 Hb_045046_010 Hb_045046_010 Hb_063100_010--Hb_045046_010 Hb_003878_140 Hb_003878_140 Hb_063100_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_063100_010--Hb_000224_060 Hb_001584_170 Hb_001584_170 Hb_063100_010--Hb_001584_170 Hb_002977_010 Hb_002977_010 Hb_063100_010--Hb_002977_010 Hb_000465_310 Hb_000465_310 Hb_063100_010--Hb_000465_310 Hb_005843_110 Hb_005843_110 Hb_001926_040--Hb_005843_110 Hb_003025_090 Hb_003025_090 Hb_001926_040--Hb_003025_090 Hb_004206_010 Hb_004206_010 Hb_001926_040--Hb_004206_010 Hb_000046_300 Hb_000046_300 Hb_001926_040--Hb_000046_300 Hb_000666_110 Hb_000666_110 Hb_001926_040--Hb_000666_110 Hb_000417_180 Hb_000417_180 Hb_001926_040--Hb_000417_180 Hb_005314_010 Hb_005314_010 Hb_024399_010--Hb_005314_010 Hb_005725_070 Hb_005725_070 Hb_024399_010--Hb_005725_070 Hb_000481_010 Hb_000481_010 Hb_024399_010--Hb_000481_010 Hb_011930_010 Hb_011930_010 Hb_024399_010--Hb_011930_010 Hb_002818_040 Hb_002818_040 Hb_024399_010--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_024399_010--Hb_000340_510 Hb_027556_010 Hb_027556_010 Hb_011716_040--Hb_027556_010 Hb_001158_030 Hb_001158_030 Hb_011716_040--Hb_001158_030 Hb_000033_050 Hb_000033_050 Hb_011716_040--Hb_000033_050 Hb_006499_010 Hb_006499_010 Hb_011716_040--Hb_006499_010 Hb_001186_060 Hb_001186_060 Hb_011716_040--Hb_001186_060 Hb_000014_100 Hb_000014_100 Hb_011716_040--Hb_000014_100 Hb_000340_010--Hb_000465_310 Hb_153150_010 Hb_153150_010 Hb_000340_010--Hb_153150_010 Hb_000340_010--Hb_024399_010 Hb_096962_020 Hb_096962_020 Hb_000340_010--Hb_096962_020 Hb_017987_070 Hb_017987_070 Hb_000340_010--Hb_017987_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.00324 1.46268 0.646447 0.0387038 3.33729 1.27975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22787 1.51672 1.5883 0.421877 0.135341

CAGE analysis