Hb_004206_010

Information

Type -
Description -
Location Contig4206: 10697-12965
Sequence    

Annotation

kegg
ID pmum:103321196
description uncharacterized LOC103321196
nr
ID XP_008221209.1
description PREDICTED: uncharacterized protein LOC103321196 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5W4D2
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014545mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41551: 10607-12800 , PASA_asmbl_41552: 10631-11003
cDNA
(Sanger)
(ID:Location)		 039_B24.ab1: 10607-12798

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004206_010 0.0 - - PREDICTED: uncharacterized protein LOC103321196 [Prunus mume]
2 Hb_000165_030 0.096789234 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
3 Hb_003609_040 0.1069562831 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
4 Hb_000107_390 0.1075432065 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
5 Hb_000172_370 0.1107172283 - - -
6 Hb_002997_170 0.1122441712 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
7 Hb_000417_180 0.1124379614 - - 60S ribosomal protein L11, putative [Ricinus communis]
8 Hb_001439_150 0.1126372611 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
9 Hb_000000_080 0.1134456158 - - lipoate-protein ligase B, putative [Ricinus communis]
10 Hb_005843_110 0.1137693805 - - Caltractin, putative [Ricinus communis]
11 Hb_000001_020 0.1145712954 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000473_040 0.1160142759 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
13 Hb_148912_010 0.1160538478 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001823_100 0.1165622703 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
15 Hb_012340_030 0.1185014205 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
16 Hb_000666_110 0.119769125 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
17 Hb_003297_030 0.1202240706 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
18 Hb_168707_030 0.1205175098 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
19 Hb_002973_080 0.1210283872 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
20 Hb_007547_010 0.1213730459 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004206_010 Hb_004206_010 Hb_000165_030 Hb_000165_030 Hb_004206_010--Hb_000165_030 Hb_003609_040 Hb_003609_040 Hb_004206_010--Hb_003609_040 Hb_000107_390 Hb_000107_390 Hb_004206_010--Hb_000107_390 Hb_000172_370 Hb_000172_370 Hb_004206_010--Hb_000172_370 Hb_002997_170 Hb_002997_170 Hb_004206_010--Hb_002997_170 Hb_000417_180 Hb_000417_180 Hb_004206_010--Hb_000417_180 Hb_000162_090 Hb_000162_090 Hb_000165_030--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000165_030--Hb_000749_150 Hb_000165_030--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000165_030--Hb_000905_190 Hb_000156_140 Hb_000156_140 Hb_000165_030--Hb_000156_140 Hb_109842_010 Hb_109842_010 Hb_000165_030--Hb_109842_010 Hb_000001_020 Hb_000001_020 Hb_003609_040--Hb_000001_020 Hb_007547_010 Hb_007547_010 Hb_003609_040--Hb_007547_010 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_000030_010 Hb_000030_010 Hb_003609_040--Hb_000030_010 Hb_003609_040--Hb_000172_370 Hb_003297_030 Hb_003297_030 Hb_003609_040--Hb_003297_030 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_012340_030 Hb_012340_030 Hb_000107_390--Hb_012340_030 Hb_000017_120 Hb_000017_120 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000107_390--Hb_000001_020 Hb_148912_010 Hb_148912_010 Hb_000172_370--Hb_148912_010 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_003038_030 Hb_003038_030 Hb_000172_370--Hb_003038_030 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_002997_170--Hb_000905_190 Hb_001741_140 Hb_001741_140 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_002997_170--Hb_168918_020 Hb_002997_170--Hb_012340_030 Hb_000417_180--Hb_000017_120 Hb_010863_080 Hb_010863_080 Hb_000417_180--Hb_010863_080 Hb_000417_180--Hb_000107_390 Hb_005527_050 Hb_005527_050 Hb_000417_180--Hb_005527_050 Hb_000417_180--Hb_003297_030 Hb_007426_230 Hb_007426_230 Hb_000417_180--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2997 3.80391 9.12454 5.58771 21.6359 18.4885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.22226 19.4226 18.955 2.48079 3.47272

CAGE analysis