Hb_005843_110

Information

Type -
Description -
Location Contig5843: 90700-93928
Sequence    

Annotation

kegg
ID rcu:RCOM_1407570
description Caltractin, putative (EC:1.3.1.74)
nr
ID XP_002523573.1
description Caltractin, putative [Ricinus communis]
swissprot
ID P41210
description Caltractin OS=Atriplex nummularia PE=2 SV=1
trembl
ID B9SC54
description Caltractin, putative OS=Ricinus communis GN=RCOM_1407570 PE=4 SV=1
Gene Ontology
ID GO:0005856
description probable calcium-binding protein cml20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49936: 90666-92644
cDNA
(Sanger)
(ID:Location)		 009_E07.ab1: 90666-92644 , 009_J09.ab1: 90666-92644 , 037_A14.ab1: 90666-92644 , 037_O24.ab1: 90666-92644

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_110 0.0 - - Caltractin, putative [Ricinus communis]
2 Hb_000107_390 0.0865234187 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
3 Hb_002997_170 0.0889306552 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
4 Hb_143766_090 0.0908240138 - - 60S ribosomal protein L31B [Hevea brasiliensis]
5 Hb_168918_020 0.0971817406 - - pectin acetylesterase, putative [Ricinus communis]
6 Hb_000141_060 0.097898996 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
7 Hb_000666_110 0.0980060266 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
8 Hb_000417_180 0.098807176 - - 60S ribosomal protein L11, putative [Ricinus communis]
9 Hb_000905_190 0.09963089 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
10 Hb_000270_840 0.1039806008 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
11 Hb_000538_020 0.106031305 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
12 Hb_012340_030 0.1067622558 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
13 Hb_005527_050 0.1068639331 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
14 Hb_000329_690 0.1081129361 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
15 Hb_012675_090 0.1091740193 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
16 Hb_005928_060 0.1094567747 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
17 Hb_000046_300 0.1132149564 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_005535_050 0.1133983294 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
19 Hb_019962_030 0.1134144722 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
20 Hb_004206_010 0.1137693805 - - PREDICTED: uncharacterized protein LOC103321196 [Prunus mume]

Gene co-expression network

sample Hb_005843_110 Hb_005843_110 Hb_000107_390 Hb_000107_390 Hb_005843_110--Hb_000107_390 Hb_002997_170 Hb_002997_170 Hb_005843_110--Hb_002997_170 Hb_143766_090 Hb_143766_090 Hb_005843_110--Hb_143766_090 Hb_168918_020 Hb_168918_020 Hb_005843_110--Hb_168918_020 Hb_000141_060 Hb_000141_060 Hb_005843_110--Hb_000141_060 Hb_000666_110 Hb_000666_110 Hb_005843_110--Hb_000666_110 Hb_000107_390--Hb_168918_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_012340_030 Hb_012340_030 Hb_000107_390--Hb_012340_030 Hb_000017_120 Hb_000017_120 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_000107_390--Hb_000001_020 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_000905_190 Hb_000905_190 Hb_002997_170--Hb_000905_190 Hb_001741_140 Hb_001741_140 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_002997_170--Hb_168918_020 Hb_002997_170--Hb_012340_030 Hb_001514_020 Hb_001514_020 Hb_143766_090--Hb_001514_020 Hb_006501_150 Hb_006501_150 Hb_143766_090--Hb_006501_150 Hb_003688_100 Hb_003688_100 Hb_143766_090--Hb_003688_100 Hb_143766_090--Hb_000141_060 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001405_050 Hb_001405_050 Hb_143766_090--Hb_001405_050 Hb_168918_020--Hb_012340_030 Hb_168918_020--Hb_000017_120 Hb_001776_110 Hb_001776_110 Hb_168918_020--Hb_001776_110 Hb_118419_020 Hb_118419_020 Hb_168918_020--Hb_118419_020 Hb_000141_060--Hb_000666_110 Hb_143629_010 Hb_143629_010 Hb_000141_060--Hb_143629_010 Hb_019962_030 Hb_019962_030 Hb_000141_060--Hb_019962_030 Hb_171900_100 Hb_171900_100 Hb_000141_060--Hb_171900_100 Hb_011794_090 Hb_011794_090 Hb_000141_060--Hb_011794_090 Hb_001504_150 Hb_001504_150 Hb_000666_110--Hb_001504_150 Hb_000666_110--Hb_019962_030 Hb_000666_110--Hb_000538_020 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1713 2.08456 3.9603 0.560917 10.3738 9.38122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.43195 8.39953 6.56558 1.88564 1.2349

CAGE analysis