Hb_000340_010

Information

Type -
Description -
Location Contig340: 1197-2854
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_010 0.0 - - -
2 Hb_000465_310 0.136357441 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027380_160 0.1428248597 - - -
4 Hb_153150_010 0.1457613754 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
5 Hb_024399_010 0.1472386292 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
6 Hb_096962_020 0.1487443692 - - -
7 Hb_017987_070 0.153540785 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
8 Hb_183510_010 0.1539224231 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
9 Hb_063100_010 0.1553890237 - - TATA box-binding protein-associated factor [Populus trichocarpa]
10 Hb_045046_010 0.1566706805 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
11 Hb_002783_230 0.157918658 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_005333_020 0.1610420741 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
13 Hb_005565_010 0.1647814094 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
14 Hb_011930_010 0.1672887473 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
15 Hb_000033_050 0.1706479101 - - -
16 Hb_001274_020 0.1716477728 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
17 Hb_005314_010 0.1725639574 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_011716_040 0.1731685777 - - -
19 Hb_009355_030 0.1732083167 - - conserved hypothetical protein [Ricinus communis]
20 Hb_015401_020 0.1755458265 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_000340_010 Hb_000340_010 Hb_000465_310 Hb_000465_310 Hb_000340_010--Hb_000465_310 Hb_027380_160 Hb_027380_160 Hb_000340_010--Hb_027380_160 Hb_153150_010 Hb_153150_010 Hb_000340_010--Hb_153150_010 Hb_024399_010 Hb_024399_010 Hb_000340_010--Hb_024399_010 Hb_096962_020 Hb_096962_020 Hb_000340_010--Hb_096962_020 Hb_017987_070 Hb_017987_070 Hb_000340_010--Hb_017987_070 Hb_005333_020 Hb_005333_020 Hb_000465_310--Hb_005333_020 Hb_006588_090 Hb_006588_090 Hb_000465_310--Hb_006588_090 Hb_000174_200 Hb_000174_200 Hb_000465_310--Hb_000174_200 Hb_005144_040 Hb_005144_040 Hb_000465_310--Hb_005144_040 Hb_003878_140 Hb_003878_140 Hb_000465_310--Hb_003878_140 Hb_002977_010 Hb_002977_010 Hb_000465_310--Hb_002977_010 Hb_003682_050 Hb_003682_050 Hb_027380_160--Hb_003682_050 Hb_063100_010 Hb_063100_010 Hb_027380_160--Hb_063100_010 Hb_001926_040 Hb_001926_040 Hb_027380_160--Hb_001926_040 Hb_027380_160--Hb_024399_010 Hb_011716_040 Hb_011716_040 Hb_027380_160--Hb_011716_040 Hb_153150_010--Hb_005333_020 Hb_005147_110 Hb_005147_110 Hb_153150_010--Hb_005147_110 Hb_005314_010 Hb_005314_010 Hb_153150_010--Hb_005314_010 Hb_008725_250 Hb_008725_250 Hb_153150_010--Hb_008725_250 Hb_000029_160 Hb_000029_160 Hb_153150_010--Hb_000029_160 Hb_153150_010--Hb_000465_310 Hb_024399_010--Hb_005314_010 Hb_005725_070 Hb_005725_070 Hb_024399_010--Hb_005725_070 Hb_000481_010 Hb_000481_010 Hb_024399_010--Hb_000481_010 Hb_011930_010 Hb_011930_010 Hb_024399_010--Hb_011930_010 Hb_002818_040 Hb_002818_040 Hb_024399_010--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_024399_010--Hb_000340_510 Hb_096962_020--Hb_011716_040 Hb_096962_020--Hb_027380_160 Hb_000033_050 Hb_000033_050 Hb_096962_020--Hb_000033_050 Hb_001452_140 Hb_001452_140 Hb_096962_020--Hb_001452_140 Hb_096962_020--Hb_153150_010 Hb_026698_010 Hb_026698_010 Hb_017987_070--Hb_026698_010 Hb_001274_020 Hb_001274_020 Hb_017987_070--Hb_001274_020 Hb_000261_490 Hb_000261_490 Hb_017987_070--Hb_000261_490 Hb_169325_010 Hb_169325_010 Hb_017987_070--Hb_169325_010 Hb_002783_230 Hb_002783_230 Hb_017987_070--Hb_002783_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0908 9.20091 1.36303 0.653237 10.0331 5.23769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.15843 4.49374 6.44224 0.995891 0

CAGE analysis