Hb_169325_010

Information

Type -
Description -
Location Contig169325: 33-1044
Sequence    

Annotation

kegg
ID pda:103699787
description uncharacterized LOC103699787
nr
ID XP_008780015.1
description PREDICTED: uncharacterized protein LOC103699787, partial [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169325_010 0.0 - - PREDICTED: uncharacterized protein LOC103699787, partial [Phoenix dactylifera]
2 Hb_004607_150 0.1438606599 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
3 Hb_000261_490 0.1579337436 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
4 Hb_000483_350 0.1627319694 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
5 Hb_000042_030 0.1643085226 transcription factor TF Family: NAC NAC domain protein, IPR003441 [Theobroma cacao]
6 Hb_180333_010 0.1661660397 - - -
7 Hb_017987_070 0.1691282057 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
8 Hb_000085_270 0.1759158066 - - PREDICTED: pirin-like protein [Malus domestica]
9 Hb_000457_170 0.1777808882 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
10 Hb_000116_470 0.1794408033 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
11 Hb_026698_010 0.18178689 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
12 Hb_001157_030 0.1843716084 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
13 Hb_002609_220 0.1858913307 - - Leucine-rich repeat protein kinase family protein, putative [Theobroma cacao]
14 Hb_008959_030 0.1879304436 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
15 Hb_006189_010 0.1896448745 - - -
16 Hb_001274_020 0.1903721246 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
17 Hb_007849_040 0.1905817922 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
18 Hb_006775_080 0.1909028444 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
19 Hb_000976_150 0.191099591 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
20 Hb_001318_030 0.1918902976 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]

Gene co-expression network

sample Hb_169325_010 Hb_169325_010 Hb_004607_150 Hb_004607_150 Hb_169325_010--Hb_004607_150 Hb_000261_490 Hb_000261_490 Hb_169325_010--Hb_000261_490 Hb_000483_350 Hb_000483_350 Hb_169325_010--Hb_000483_350 Hb_000042_030 Hb_000042_030 Hb_169325_010--Hb_000042_030 Hb_180333_010 Hb_180333_010 Hb_169325_010--Hb_180333_010 Hb_017987_070 Hb_017987_070 Hb_169325_010--Hb_017987_070 Hb_004607_150--Hb_180333_010 Hb_006189_010 Hb_006189_010 Hb_004607_150--Hb_006189_010 Hb_002798_060 Hb_002798_060 Hb_004607_150--Hb_002798_060 Hb_000116_470 Hb_000116_470 Hb_004607_150--Hb_000116_470 Hb_004012_010 Hb_004012_010 Hb_004607_150--Hb_004012_010 Hb_004920_040 Hb_004920_040 Hb_004607_150--Hb_004920_040 Hb_000261_490--Hb_000042_030 Hb_000078_180 Hb_000078_180 Hb_000261_490--Hb_000078_180 Hb_001318_030 Hb_001318_030 Hb_000261_490--Hb_001318_030 Hb_000457_170 Hb_000457_170 Hb_000261_490--Hb_000457_170 Hb_003929_260 Hb_003929_260 Hb_000261_490--Hb_003929_260 Hb_005843_100 Hb_005843_100 Hb_000261_490--Hb_005843_100 Hb_004109_200 Hb_004109_200 Hb_000483_350--Hb_004109_200 Hb_000554_020 Hb_000554_020 Hb_000483_350--Hb_000554_020 Hb_004055_010 Hb_004055_010 Hb_000483_350--Hb_004055_010 Hb_004221_010 Hb_004221_010 Hb_000483_350--Hb_004221_010 Hb_009382_020 Hb_009382_020 Hb_000483_350--Hb_009382_020 Hb_000085_270 Hb_000085_270 Hb_000483_350--Hb_000085_270 Hb_002399_010 Hb_002399_010 Hb_000042_030--Hb_002399_010 Hb_000042_030--Hb_003929_260 Hb_000042_030--Hb_004109_200 Hb_061802_020 Hb_061802_020 Hb_000042_030--Hb_061802_020 Hb_001913_010 Hb_001913_010 Hb_000042_030--Hb_001913_010 Hb_180333_010--Hb_006189_010 Hb_003185_020 Hb_003185_020 Hb_180333_010--Hb_003185_020 Hb_003106_070 Hb_003106_070 Hb_180333_010--Hb_003106_070 Hb_180333_010--Hb_004012_010 Hb_180333_010--Hb_000085_270 Hb_026698_010 Hb_026698_010 Hb_017987_070--Hb_026698_010 Hb_000340_010 Hb_000340_010 Hb_017987_070--Hb_000340_010 Hb_001274_020 Hb_001274_020 Hb_017987_070--Hb_001274_020 Hb_017987_070--Hb_000261_490 Hb_002783_230 Hb_002783_230 Hb_017987_070--Hb_002783_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.634671 0.457851 0 0.023191 0.293139 0.297275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.51268 0.352747 0.365895 0.0611104 0.101542

CAGE analysis