Hb_030928_040

Information

Type -
Description -
Location Contig30928: 42605-49963
Sequence    

Annotation

kegg
ID rcu:RCOM_1313900
description RNA-binding protein, putative
nr
ID XP_002518926.1
description RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q9LPI5
description Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana GN=CID11 PE=2 SV=1
trembl
ID B9RYV7
description RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1313900 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein-interacting protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32688: 45622-45913 , PASA_asmbl_32689: 43014-49835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030928_040 0.0 - - RNA-binding protein, putative [Ricinus communis]
2 Hb_000236_240 0.1237506123 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
3 Hb_002316_130 0.123960723 - - hypothetical protein POPTR_0015s08440g [Populus trichocarpa]
4 Hb_005618_050 0.1252581731 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
5 Hb_004785_100 0.1255815032 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001821_160 0.1266953281 - - serine/arginine rich splicing factor, putative [Ricinus communis]
7 Hb_004837_190 0.1270264806 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
8 Hb_001135_220 0.1274883241 - - FGFR1 oncogene partner, putative [Ricinus communis]
9 Hb_001329_130 0.1276793418 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002110_230 0.1277783634 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_002154_120 0.1282792632 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
12 Hb_002367_130 0.1284130644 - - UNC-50 family protein isoform 1 [Theobroma cacao]
13 Hb_027472_120 0.1295838589 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_009803_040 0.1301684745 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
15 Hb_005656_210 0.1317487076 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
16 Hb_002805_270 0.1330768251 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_012753_170 0.1352243706 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
18 Hb_000049_140 0.1359807205 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
19 Hb_000174_110 0.1361114024 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_003849_250 0.1368104964 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_030928_040 Hb_030928_040 Hb_000236_240 Hb_000236_240 Hb_030928_040--Hb_000236_240 Hb_002316_130 Hb_002316_130 Hb_030928_040--Hb_002316_130 Hb_005618_050 Hb_005618_050 Hb_030928_040--Hb_005618_050 Hb_004785_100 Hb_004785_100 Hb_030928_040--Hb_004785_100 Hb_001821_160 Hb_001821_160 Hb_030928_040--Hb_001821_160 Hb_004837_190 Hb_004837_190 Hb_030928_040--Hb_004837_190 Hb_000260_100 Hb_000260_100 Hb_000236_240--Hb_000260_100 Hb_001329_130 Hb_001329_130 Hb_000236_240--Hb_001329_130 Hb_002997_080 Hb_002997_080 Hb_000236_240--Hb_002997_080 Hb_000883_020 Hb_000883_020 Hb_000236_240--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_000236_240--Hb_000866_010 Hb_009421_020 Hb_009421_020 Hb_000236_240--Hb_009421_020 Hb_000317_470 Hb_000317_470 Hb_002316_130--Hb_000317_470 Hb_005144_090 Hb_005144_090 Hb_002316_130--Hb_005144_090 Hb_000049_140 Hb_000049_140 Hb_002316_130--Hb_000049_140 Hb_003185_010 Hb_003185_010 Hb_002316_130--Hb_003185_010 Hb_002783_170 Hb_002783_170 Hb_002316_130--Hb_002783_170 Hb_005588_090 Hb_005588_090 Hb_005618_050--Hb_005588_090 Hb_002110_230 Hb_002110_230 Hb_005618_050--Hb_002110_230 Hb_123915_040 Hb_123915_040 Hb_005618_050--Hb_123915_040 Hb_000035_470 Hb_000035_470 Hb_005618_050--Hb_000035_470 Hb_003375_070 Hb_003375_070 Hb_005618_050--Hb_003375_070 Hb_002073_190 Hb_002073_190 Hb_005618_050--Hb_002073_190 Hb_131646_010 Hb_131646_010 Hb_004785_100--Hb_131646_010 Hb_002835_230 Hb_002835_230 Hb_004785_100--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_004785_100--Hb_002686_250 Hb_004785_100--Hb_001821_160 Hb_006960_050 Hb_006960_050 Hb_004785_100--Hb_006960_050 Hb_002078_110 Hb_002078_110 Hb_004785_100--Hb_002078_110 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060 Hb_006620_020 Hb_006620_020 Hb_004837_190--Hb_006620_020 Hb_031527_100 Hb_031527_100 Hb_004837_190--Hb_031527_100 Hb_001341_120 Hb_001341_120 Hb_004837_190--Hb_001341_120 Hb_000913_050 Hb_000913_050 Hb_004837_190--Hb_000913_050 Hb_000538_100 Hb_000538_100 Hb_004837_190--Hb_000538_100 Hb_000618_030 Hb_000618_030 Hb_004837_190--Hb_000618_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.23733 4.56942 11.5535 6.34672 23.3253 7.36116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.47386 8.35004 4.65643 8.25874 7.71721

CAGE analysis