Hb_000608_040

Information

Type -
Description -
Location Contig608: 14473-14739
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50813: 12213-14723
cDNA
(Sanger)
(ID:Location)		 018_L20.ab1: 12223-14195

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_040 0.0 - - -
2 Hb_005535_060 0.1033736664 - - -
3 Hb_001703_130 0.1369710798 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
4 Hb_012184_050 0.1469440772 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
5 Hb_000580_130 0.1485201646 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
6 Hb_002805_170 0.1496223444 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
7 Hb_001922_130 0.152568875 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
8 Hb_000504_170 0.1552454115 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
9 Hb_063409_020 0.1614318843 - - Calcium-binding protein, putative [Ricinus communis]
10 Hb_007951_100 0.1625923434 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_005695_060 0.1681677386 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
12 Hb_001473_190 0.1706418598 - - 50S ribosomal protein L20 [Hevea brasiliensis]
13 Hb_156144_030 0.1731569697 - - hypothetical protein RCOM_0187400 [Ricinus communis]
14 Hb_002783_120 0.1739700963 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
15 Hb_000169_190 0.173999626 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
16 Hb_001473_080 0.1750769231 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
17 Hb_010883_080 0.1820574661 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
18 Hb_000453_190 0.1842800398 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
19 Hb_002947_040 0.1901093616 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
20 Hb_000116_570 0.1917214521 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000608_040 Hb_000608_040 Hb_005535_060 Hb_005535_060 Hb_000608_040--Hb_005535_060 Hb_001703_130 Hb_001703_130 Hb_000608_040--Hb_001703_130 Hb_012184_050 Hb_012184_050 Hb_000608_040--Hb_012184_050 Hb_000580_130 Hb_000580_130 Hb_000608_040--Hb_000580_130 Hb_002805_170 Hb_002805_170 Hb_000608_040--Hb_002805_170 Hb_001922_130 Hb_001922_130 Hb_000608_040--Hb_001922_130 Hb_005535_060--Hb_001703_130 Hb_005535_060--Hb_002805_170 Hb_005535_060--Hb_012184_050 Hb_001473_190 Hb_001473_190 Hb_005535_060--Hb_001473_190 Hb_063409_020 Hb_063409_020 Hb_005535_060--Hb_063409_020 Hb_001703_130--Hb_002805_170 Hb_000116_570 Hb_000116_570 Hb_001703_130--Hb_000116_570 Hb_001703_130--Hb_063409_020 Hb_010883_080 Hb_010883_080 Hb_001703_130--Hb_010883_080 Hb_000281_010 Hb_000281_010 Hb_001703_130--Hb_000281_010 Hb_000685_080 Hb_000685_080 Hb_001703_130--Hb_000685_080 Hb_012184_050--Hb_002805_170 Hb_000169_190 Hb_000169_190 Hb_012184_050--Hb_000169_190 Hb_000045_320 Hb_000045_320 Hb_012184_050--Hb_000045_320 Hb_121729_020 Hb_121729_020 Hb_012184_050--Hb_121729_020 Hb_007951_100 Hb_007951_100 Hb_012184_050--Hb_007951_100 Hb_005695_060 Hb_005695_060 Hb_012184_050--Hb_005695_060 Hb_000120_570 Hb_000120_570 Hb_000580_130--Hb_000120_570 Hb_001534_070 Hb_001534_070 Hb_000580_130--Hb_001534_070 Hb_000580_130--Hb_001922_130 Hb_003125_140 Hb_003125_140 Hb_000580_130--Hb_003125_140 Hb_000580_130--Hb_001703_130 Hb_000580_130--Hb_063409_020 Hb_002805_170--Hb_007951_100 Hb_002805_170--Hb_010883_080 Hb_002805_170--Hb_000045_320 Hb_002612_010 Hb_002612_010 Hb_002805_170--Hb_002612_010 Hb_001473_080 Hb_001473_080 Hb_001922_130--Hb_001473_080 Hb_001922_130--Hb_000120_570 Hb_001922_130--Hb_010883_080 Hb_004374_150 Hb_004374_150 Hb_001922_130--Hb_004374_150 Hb_001922_130--Hb_000116_570 Hb_000186_260 Hb_000186_260 Hb_001922_130--Hb_000186_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3404 12.2046 17.0193 0.829131 30.8671 11.3422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.69351 4.05578 1.6172 1.70644 1.74208

CAGE analysis