Hb_001810_030

Information

Type -
Description -
Location Contig1810: 32886-35971
Sequence    

Annotation

kegg
ID rcu:RCOM_1580440
description RNA polymerase sigma factor rpoD, putative
nr
ID XP_002513587.1
description RNA polymerase sigma factor rpoD, putative [Ricinus communis]
swissprot
ID Q9ZNX9
description RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SIGE PE=1 SV=1
trembl
ID B9RIL8
description RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_1580440 PE=4 SV=1
Gene Ontology
ID GO:0009987
description rna polymerase sigma factor chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17559: 35068-38130
cDNA
(Sanger)
(ID:Location)		 046_D22.ab1: 35650-38129

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001810_030 0.0 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
2 Hb_030565_080 0.1162882493 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
3 Hb_000265_240 0.1299541244 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
4 Hb_002316_130 0.1342624847 - - hypothetical protein POPTR_0015s08440g [Populus trichocarpa]
5 Hb_001564_130 0.1380316714 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_030928_040 0.1394907675 - - RNA-binding protein, putative [Ricinus communis]
7 Hb_003292_040 0.1459446419 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
8 Hb_000679_060 0.1477773913 - - ADP,ATP carrier protein, putative [Ricinus communis]
9 Hb_000771_080 0.1493975046 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
10 Hb_001329_290 0.1495167933 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
11 Hb_003025_020 0.1503888719 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000286_070 0.1519619516 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
13 Hb_000670_020 0.1537103687 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
14 Hb_004449_170 0.1565407058 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
15 Hb_001329_130 0.1585153725 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001348_070 0.1588423588 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_012340_080 0.1615248698 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
18 Hb_000174_110 0.1628546555 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
19 Hb_005656_210 0.1630145485 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
20 Hb_000181_110 0.1643229006 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]

Gene co-expression network

sample Hb_001810_030 Hb_001810_030 Hb_030565_080 Hb_030565_080 Hb_001810_030--Hb_030565_080 Hb_000265_240 Hb_000265_240 Hb_001810_030--Hb_000265_240 Hb_002316_130 Hb_002316_130 Hb_001810_030--Hb_002316_130 Hb_001564_130 Hb_001564_130 Hb_001810_030--Hb_001564_130 Hb_030928_040 Hb_030928_040 Hb_001810_030--Hb_030928_040 Hb_003292_040 Hb_003292_040 Hb_001810_030--Hb_003292_040 Hb_030565_080--Hb_000265_240 Hb_000771_080 Hb_000771_080 Hb_030565_080--Hb_000771_080 Hb_000098_190 Hb_000098_190 Hb_030565_080--Hb_000098_190 Hb_097783_020 Hb_097783_020 Hb_030565_080--Hb_097783_020 Hb_003788_050 Hb_003788_050 Hb_030565_080--Hb_003788_050 Hb_001329_290 Hb_001329_290 Hb_000265_240--Hb_001329_290 Hb_000265_240--Hb_001564_130 Hb_004449_170 Hb_004449_170 Hb_000265_240--Hb_004449_170 Hb_000377_070 Hb_000377_070 Hb_000265_240--Hb_000377_070 Hb_000265_240--Hb_003292_040 Hb_002316_130--Hb_030928_040 Hb_000317_470 Hb_000317_470 Hb_002316_130--Hb_000317_470 Hb_005144_090 Hb_005144_090 Hb_002316_130--Hb_005144_090 Hb_000049_140 Hb_000049_140 Hb_002316_130--Hb_000049_140 Hb_003185_010 Hb_003185_010 Hb_002316_130--Hb_003185_010 Hb_002783_170 Hb_002783_170 Hb_002316_130--Hb_002783_170 Hb_001564_130--Hb_003292_040 Hb_000670_020 Hb_000670_020 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070 Hb_000236_240 Hb_000236_240 Hb_030928_040--Hb_000236_240 Hb_005618_050 Hb_005618_050 Hb_030928_040--Hb_005618_050 Hb_004785_100 Hb_004785_100 Hb_030928_040--Hb_004785_100 Hb_001821_160 Hb_001821_160 Hb_030928_040--Hb_001821_160 Hb_004837_190 Hb_004837_190 Hb_030928_040--Hb_004837_190 Hb_003292_040--Hb_011970_030 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.52708 3.58292 9.22264 3.32714 17.1388 3.69876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.57982 10.9531 3.54126 6.38982 1.96295

CAGE analysis