Hb_003788_050

Information

Type -
Description -
Location Contig3788: 77122-92481
Sequence    

Annotation

kegg
ID rcu:RCOM_1172130
description interferon-induced guanylate-binding protein, putative
nr
ID XP_012088208.1
description PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
swissprot
ID P32456
description Interferon-induced guanylate-binding protein 2 OS=Homo sapiens GN=GBP2 PE=1 SV=3
trembl
ID B9RVS9
description Interferon-induced guanylate-binding protein, putative OS=Ricinus communis GN=RCOM_1172130 PE=4 SV=1
Gene Ontology
ID GO:0000166
description guanylate-binding protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38530: 81306-88640 , PASA_asmbl_38531: 84449-84581 , PASA_asmbl_38532: 90105-91302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003788_050 0.0 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
2 Hb_000358_250 0.08665286 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
3 Hb_089032_020 0.0970474552 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
4 Hb_003025_020 0.0981455939 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000640_230 0.1104851919 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009803_040 0.1109069146 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
7 Hb_000076_270 0.1119827424 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
8 Hb_007747_060 0.1150585581 - - PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Jatropha curcas]
9 Hb_091384_010 0.1151328909 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
10 Hb_004512_020 0.1178000988 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
11 Hb_000211_110 0.1180085296 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
12 Hb_018790_030 0.11863494 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
13 Hb_066182_010 0.119501153 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
14 Hb_005895_040 0.1195818832 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
15 Hb_002067_040 0.1203221589 - - dihydrodipicolinate reductase, putative [Ricinus communis]
16 Hb_097783_020 0.1224300685 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
17 Hb_001300_070 0.1225124221 - - OTU domain-containing protein 6B, putative [Ricinus communis]
18 Hb_004837_190 0.1231682416 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
19 Hb_000429_200 0.1232061655 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
20 Hb_000290_020 0.123411852 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_003788_050 Hb_003788_050 Hb_000358_250 Hb_000358_250 Hb_003788_050--Hb_000358_250 Hb_089032_020 Hb_089032_020 Hb_003788_050--Hb_089032_020 Hb_003025_020 Hb_003025_020 Hb_003788_050--Hb_003025_020 Hb_000640_230 Hb_000640_230 Hb_003788_050--Hb_000640_230 Hb_009803_040 Hb_009803_040 Hb_003788_050--Hb_009803_040 Hb_000076_270 Hb_000076_270 Hb_003788_050--Hb_000076_270 Hb_002477_130 Hb_002477_130 Hb_000358_250--Hb_002477_130 Hb_031939_010 Hb_031939_010 Hb_000358_250--Hb_031939_010 Hb_000116_180 Hb_000116_180 Hb_000358_250--Hb_000116_180 Hb_000538_100 Hb_000538_100 Hb_000358_250--Hb_000538_100 Hb_000429_200 Hb_000429_200 Hb_000358_250--Hb_000429_200 Hb_003849_250 Hb_003849_250 Hb_000358_250--Hb_003849_250 Hb_002067_040 Hb_002067_040 Hb_089032_020--Hb_002067_040 Hb_089032_020--Hb_000640_230 Hb_001518_040 Hb_001518_040 Hb_089032_020--Hb_001518_040 Hb_089032_020--Hb_000358_250 Hb_001300_070 Hb_001300_070 Hb_089032_020--Hb_001300_070 Hb_002081_130 Hb_002081_130 Hb_003025_020--Hb_002081_130 Hb_066182_010 Hb_066182_010 Hb_003025_020--Hb_066182_010 Hb_003025_020--Hb_002067_040 Hb_002149_020 Hb_002149_020 Hb_003025_020--Hb_002149_020 Hb_002043_190 Hb_002043_190 Hb_003025_020--Hb_002043_190 Hb_009838_090 Hb_009838_090 Hb_003025_020--Hb_009838_090 Hb_004044_020 Hb_004044_020 Hb_000640_230--Hb_004044_020 Hb_003097_150 Hb_003097_150 Hb_000640_230--Hb_003097_150 Hb_002007_250 Hb_002007_250 Hb_000640_230--Hb_002007_250 Hb_010128_130 Hb_010128_130 Hb_000640_230--Hb_010128_130 Hb_000207_310 Hb_000207_310 Hb_000640_230--Hb_000207_310 Hb_002367_130 Hb_002367_130 Hb_000640_230--Hb_002367_130 Hb_006634_040 Hb_006634_040 Hb_009803_040--Hb_006634_040 Hb_009803_040--Hb_003025_020 Hb_001124_120 Hb_001124_120 Hb_009803_040--Hb_001124_120 Hb_009803_040--Hb_000076_270 Hb_009803_040--Hb_000429_200 Hb_001341_120 Hb_001341_120 Hb_000076_270--Hb_001341_120 Hb_002273_130 Hb_002273_130 Hb_000076_270--Hb_002273_130 Hb_000076_270--Hb_001300_070 Hb_091384_010 Hb_091384_010 Hb_000076_270--Hb_091384_010 Hb_000913_050 Hb_000913_050 Hb_000076_270--Hb_000913_050 Hb_002272_180 Hb_002272_180 Hb_000076_270--Hb_002272_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.46524 2.12345 2.19171 2.81589 11.7274 5.55283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4991 4.56053 2.08747 2.88066 1.48385

CAGE analysis