Hb_000012_180

Information

Type -
Description -
Location Contig12: 287488-291946
Sequence    

Annotation

kegg
ID rcu:RCOM_0798410
description hypothetical protein
nr
ID XP_002516471.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RRV2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0798410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001565_100 0.1648591821 - - unnamed protein product [Coffea canephora]
3 Hb_073973_170 0.1716636061 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
4 Hb_074683_020 0.1732632374 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
5 Hb_003813_200 0.1758912191 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_000038_130 0.1804686152 - - -
7 Hb_000307_170 0.1807974808 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
8 Hb_007017_060 0.1830207561 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
9 Hb_004137_030 0.1842798414 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003849_080 0.1848304845 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_002942_070 0.1850653569 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
12 Hb_003018_110 0.1886901176 - - -
13 Hb_001623_370 0.188732445 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009801_010 0.1894096841 - - ATPase inhibitor, putative [Ricinus communis]
15 Hb_007416_200 0.1918502964 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
16 Hb_001663_110 0.1920210081 - - RNA binding protein, putative [Ricinus communis]
17 Hb_001405_050 0.1922692752 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
18 Hb_001956_050 0.1923071298 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
19 Hb_001956_120 0.1942387907 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000590_090 0.194595421 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_180 Hb_000012_180 Hb_001565_100 Hb_001565_100 Hb_000012_180--Hb_001565_100 Hb_073973_170 Hb_073973_170 Hb_000012_180--Hb_073973_170 Hb_074683_020 Hb_074683_020 Hb_000012_180--Hb_074683_020 Hb_003813_200 Hb_003813_200 Hb_000012_180--Hb_003813_200 Hb_000038_130 Hb_000038_130 Hb_000012_180--Hb_000038_130 Hb_000307_170 Hb_000307_170 Hb_000012_180--Hb_000307_170 Hb_002078_430 Hb_002078_430 Hb_001565_100--Hb_002078_430 Hb_011609_030 Hb_011609_030 Hb_001565_100--Hb_011609_030 Hb_000714_020 Hb_000714_020 Hb_001565_100--Hb_000714_020 Hb_001565_100--Hb_074683_020 Hb_003849_080 Hb_003849_080 Hb_001565_100--Hb_003849_080 Hb_001565_100--Hb_000038_130 Hb_004137_030 Hb_004137_030 Hb_073973_170--Hb_004137_030 Hb_002619_010 Hb_002619_010 Hb_073973_170--Hb_002619_010 Hb_001956_050 Hb_001956_050 Hb_073973_170--Hb_001956_050 Hb_073973_170--Hb_000714_020 Hb_001405_050 Hb_001405_050 Hb_073973_170--Hb_001405_050 Hb_027380_040 Hb_027380_040 Hb_073973_170--Hb_027380_040 Hb_000093_130 Hb_000093_130 Hb_074683_020--Hb_000093_130 Hb_000808_060 Hb_000808_060 Hb_074683_020--Hb_000808_060 Hb_000264_060 Hb_000264_060 Hb_074683_020--Hb_000264_060 Hb_003581_110 Hb_003581_110 Hb_074683_020--Hb_003581_110 Hb_001227_110 Hb_001227_110 Hb_074683_020--Hb_001227_110 Hb_007416_200 Hb_007416_200 Hb_074683_020--Hb_007416_200 Hb_003813_200--Hb_007416_200 Hb_003813_200--Hb_000093_130 Hb_000692_170 Hb_000692_170 Hb_003813_200--Hb_000692_170 Hb_003813_200--Hb_001956_050 Hb_000025_750 Hb_000025_750 Hb_003813_200--Hb_000025_750 Hb_000684_300 Hb_000684_300 Hb_003813_200--Hb_000684_300 Hb_000038_130--Hb_000714_020 Hb_001635_220 Hb_001635_220 Hb_000038_130--Hb_001635_220 Hb_000117_040 Hb_000117_040 Hb_000038_130--Hb_000117_040 Hb_000038_130--Hb_002078_430 Hb_000590_090 Hb_000590_090 Hb_000038_130--Hb_000590_090 Hb_004374_010 Hb_004374_010 Hb_000038_130--Hb_004374_010 Hb_004032_060 Hb_004032_060 Hb_000307_170--Hb_004032_060 Hb_004032_050 Hb_004032_050 Hb_000307_170--Hb_004032_050 Hb_002276_190 Hb_002276_190 Hb_000307_170--Hb_002276_190 Hb_009801_010 Hb_009801_010 Hb_000307_170--Hb_009801_010 Hb_006261_040 Hb_006261_040 Hb_000307_170--Hb_006261_040 Hb_006501_150 Hb_006501_150 Hb_000307_170--Hb_006501_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.665409 0.0602131 0.189885 0.0117758 0.411984 0.345849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.179734 0.33934 0.0528633 0.0226159 0

CAGE analysis