Hb_002483_020

Information

Type -
Description -
Location Contig2483: 23345-24734
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002483_020 0.0 - - -
2 Hb_140595_010 0.2027121672 - - -
3 Hb_000062_380 0.2050086271 - - PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]
4 Hb_000318_260 0.2178284068 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
5 Hb_000088_030 0.2183955973 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
6 Hb_089140_080 0.2277008947 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
7 Hb_006631_010 0.2278547772 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
8 Hb_000173_210 0.2279690166 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
9 Hb_005228_120 0.2324309626 - - phospholipase d beta, putative [Ricinus communis]
10 Hb_009801_010 0.2326155682 - - ATPase inhibitor, putative [Ricinus communis]
11 Hb_156593_050 0.2335407293 - - PREDICTED: DNA-binding protein RHL1 isoform X1 [Jatropha curcas]
12 Hb_000392_280 0.2339676899 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
13 Hb_001922_130 0.2341608116 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
14 Hb_010795_060 0.2342919391 - - -
15 Hb_002728_020 0.2378018719 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
16 Hb_000566_140 0.2385453112 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
17 Hb_045502_010 0.2396678725 - - prefoldin subunit 1 [Jatropha curcas]
18 Hb_035360_010 0.2397292225 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
19 Hb_000751_090 0.2407349208 - - -
20 Hb_001195_030 0.241562374 - - auxilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002483_020 Hb_002483_020 Hb_140595_010 Hb_140595_010 Hb_002483_020--Hb_140595_010 Hb_000062_380 Hb_000062_380 Hb_002483_020--Hb_000062_380 Hb_000318_260 Hb_000318_260 Hb_002483_020--Hb_000318_260 Hb_000088_030 Hb_000088_030 Hb_002483_020--Hb_000088_030 Hb_089140_080 Hb_089140_080 Hb_002483_020--Hb_089140_080 Hb_006631_010 Hb_006631_010 Hb_002483_020--Hb_006631_010 Hb_000544_120 Hb_000544_120 Hb_140595_010--Hb_000544_120 Hb_000580_130 Hb_000580_130 Hb_140595_010--Hb_000580_130 Hb_140595_010--Hb_006631_010 Hb_107847_010 Hb_107847_010 Hb_140595_010--Hb_107847_010 Hb_125861_010 Hb_125861_010 Hb_140595_010--Hb_125861_010 Hb_140595_010--Hb_000088_030 Hb_001276_020 Hb_001276_020 Hb_000062_380--Hb_001276_020 Hb_000062_380--Hb_000318_260 Hb_012867_010 Hb_012867_010 Hb_000062_380--Hb_012867_010 Hb_005928_080 Hb_005928_080 Hb_000062_380--Hb_005928_080 Hb_000062_380--Hb_000088_030 Hb_004712_110 Hb_004712_110 Hb_000318_260--Hb_004712_110 Hb_000987_050 Hb_000987_050 Hb_000318_260--Hb_000987_050 Hb_000424_160 Hb_000424_160 Hb_000318_260--Hb_000424_160 Hb_000317_080 Hb_000317_080 Hb_000318_260--Hb_000317_080 Hb_000318_260--Hb_000088_030 Hb_000976_180 Hb_000976_180 Hb_000318_260--Hb_000976_180 Hb_002903_120 Hb_002903_120 Hb_000088_030--Hb_002903_120 Hb_045502_010 Hb_045502_010 Hb_000088_030--Hb_045502_010 Hb_000088_030--Hb_000580_130 Hb_002728_020 Hb_002728_020 Hb_089140_080--Hb_002728_020 Hb_000500_290 Hb_000500_290 Hb_089140_080--Hb_000500_290 Hb_001348_140 Hb_001348_140 Hb_089140_080--Hb_001348_140 Hb_011537_040 Hb_011537_040 Hb_089140_080--Hb_011537_040 Hb_000188_190 Hb_000188_190 Hb_089140_080--Hb_000188_190 Hb_003913_100 Hb_003913_100 Hb_089140_080--Hb_003913_100 Hb_006631_010--Hb_000544_120 Hb_002897_040 Hb_002897_040 Hb_006631_010--Hb_002897_040 Hb_000619_070 Hb_000619_070 Hb_006631_010--Hb_000619_070 Hb_000016_280 Hb_000016_280 Hb_006631_010--Hb_000016_280 Hb_035360_010 Hb_035360_010 Hb_006631_010--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_006631_010--Hb_000608_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19708 0.160334 0.298517 0.182931 2.56908 0.830861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.863244 0.169528 0 0.366334 0

CAGE analysis