Hb_000424_160

Information

Type -
Description -
Location Contig424: 179228-179608
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23570g
description POPTRDRAFT_1081299; hypothetical protein
nr
ID XP_002308514.1
description hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HCQ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23570g PE=4 SV=1
Gene Ontology
ID GO:0016874
description arginine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41925: 179018-179977
cDNA
(Sanger)
(ID:Location)		 022_O19.ab1: 179738-179924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_160 0.0 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
2 Hb_000318_260 0.1769820731 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
3 Hb_085375_010 0.2016415134 - - protein with unknown function [Ricinus communis]
4 Hb_000976_180 0.2217215211 - - PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]
5 Hb_000345_120 0.2285272964 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]
6 Hb_003320_030 0.2355872133 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004712_110 0.2418562491 - - 30S ribosomal protein S10, putative [Ricinus communis]
8 Hb_097433_010 0.2460002683 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
9 Hb_001329_260 0.2470005371 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
10 Hb_000987_050 0.2483797659 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
11 Hb_003462_010 0.2503536667 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_011515_030 0.2536088371 - - -
13 Hb_001946_360 0.255771423 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
14 Hb_002983_100 0.2566294703 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
15 Hb_168978_040 0.2602143933 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
16 Hb_000008_230 0.2615882116 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
17 Hb_000088_030 0.2636510029 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
18 Hb_004650_080 0.2675897619 - - -
19 Hb_007382_020 0.2695628632 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
20 Hb_000317_080 0.2717545218 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]

Gene co-expression network

sample Hb_000424_160 Hb_000424_160 Hb_000318_260 Hb_000318_260 Hb_000424_160--Hb_000318_260 Hb_085375_010 Hb_085375_010 Hb_000424_160--Hb_085375_010 Hb_000976_180 Hb_000976_180 Hb_000424_160--Hb_000976_180 Hb_000345_120 Hb_000345_120 Hb_000424_160--Hb_000345_120 Hb_003320_030 Hb_003320_030 Hb_000424_160--Hb_003320_030 Hb_004712_110 Hb_004712_110 Hb_000424_160--Hb_004712_110 Hb_000318_260--Hb_004712_110 Hb_000987_050 Hb_000987_050 Hb_000318_260--Hb_000987_050 Hb_000317_080 Hb_000317_080 Hb_000318_260--Hb_000317_080 Hb_000088_030 Hb_000088_030 Hb_000318_260--Hb_000088_030 Hb_000318_260--Hb_000976_180 Hb_097433_010 Hb_097433_010 Hb_085375_010--Hb_097433_010 Hb_000008_230 Hb_000008_230 Hb_085375_010--Hb_000008_230 Hb_085375_010--Hb_004712_110 Hb_003125_140 Hb_003125_140 Hb_085375_010--Hb_003125_140 Hb_000206_130 Hb_000206_130 Hb_085375_010--Hb_000206_130 Hb_000580_130 Hb_000580_130 Hb_085375_010--Hb_000580_130 Hb_004659_070 Hb_004659_070 Hb_000976_180--Hb_004659_070 Hb_000976_180--Hb_000987_050 Hb_000976_180--Hb_000317_080 Hb_011515_030 Hb_011515_030 Hb_000976_180--Hb_011515_030 Hb_053543_010 Hb_053543_010 Hb_000976_180--Hb_053543_010 Hb_002890_190 Hb_002890_190 Hb_000345_120--Hb_002890_190 Hb_003462_010 Hb_003462_010 Hb_000345_120--Hb_003462_010 Hb_005730_080 Hb_005730_080 Hb_000345_120--Hb_005730_080 Hb_027751_050 Hb_027751_050 Hb_000345_120--Hb_027751_050 Hb_153558_010 Hb_153558_010 Hb_000345_120--Hb_153558_010 Hb_002983_100 Hb_002983_100 Hb_003320_030--Hb_002983_100 Hb_001329_260 Hb_001329_260 Hb_003320_030--Hb_001329_260 Hb_005116_020 Hb_005116_020 Hb_003320_030--Hb_005116_020 Hb_001159_210 Hb_001159_210 Hb_003320_030--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_003320_030--Hb_000038_150 Hb_134732_010 Hb_134732_010 Hb_003320_030--Hb_134732_010 Hb_099698_010 Hb_099698_010 Hb_004712_110--Hb_099698_010 Hb_000040_050 Hb_000040_050 Hb_004712_110--Hb_000040_050 Hb_000173_210 Hb_000173_210 Hb_004712_110--Hb_000173_210 Hb_005228_120 Hb_005228_120 Hb_004712_110--Hb_005228_120 Hb_001534_070 Hb_001534_070 Hb_004712_110--Hb_001534_070 Hb_000940_040 Hb_000940_040 Hb_004712_110--Hb_000940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0487 2.92781 23.7362 2.80845 196.673 20.5912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4949 4.47724 9.49414 5.14447 4.75956

CAGE analysis