Hb_000345_120

Information

Type -
Description -
Location Contig345: 139111-146015
Sequence    

Annotation

kegg
ID rcu:RCOM_1433120
description hypothetical protein
nr
ID XP_012089020.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]
swissprot
ID Q03685
description Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1
trembl
ID A0A067JHR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23319 PE=3 SV=1
Gene Ontology
ID GO:0005524
description luminal-binding protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35982: 139663-140368 , PASA_asmbl_35983: 140576-140694 , PASA_asmbl_35984: 140780-142415 , PASA_asmbl_35986: 144550-144862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_120 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]
2 Hb_002890_190 0.2211101403 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
3 Hb_000424_160 0.2285272964 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
4 Hb_003462_010 0.2300370086 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_005730_080 0.2495895383 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
6 Hb_027751_050 0.256504436 - - hypothetical protein JCGZ_05887 [Jatropha curcas]
7 Hb_153558_010 0.2611634599 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
8 Hb_029508_010 0.2645925723 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
9 Hb_002900_060 0.2703437224 - - CI small heat shock protein 2 [Prunus salicina]
10 Hb_000227_420 0.2707863373 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
11 Hb_000115_170 0.2709550258 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
12 Hb_000107_130 0.2737633659 - - multicopper oxidase, putative [Ricinus communis]
13 Hb_005730_100 0.2750586739 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
14 Hb_000005_040 0.2776317189 - - PREDICTED: histone H2B.2 [Jatropha curcas]
15 Hb_007127_010 0.2804428115 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
16 Hb_000891_080 0.280841008 - - PREDICTED: TMV resistance protein N-like, partial [Populus euphratica]
17 Hb_007382_020 0.2833472757 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
18 Hb_116436_010 0.2870124295 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
19 Hb_002595_100 0.2900614131 - - heat-shock protein, putative [Ricinus communis]
20 Hb_168893_010 0.2930726421 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_000345_120 Hb_000345_120 Hb_002890_190 Hb_002890_190 Hb_000345_120--Hb_002890_190 Hb_000424_160 Hb_000424_160 Hb_000345_120--Hb_000424_160 Hb_003462_010 Hb_003462_010 Hb_000345_120--Hb_003462_010 Hb_005730_080 Hb_005730_080 Hb_000345_120--Hb_005730_080 Hb_027751_050 Hb_027751_050 Hb_000345_120--Hb_027751_050 Hb_153558_010 Hb_153558_010 Hb_000345_120--Hb_153558_010 Hb_005730_100 Hb_005730_100 Hb_002890_190--Hb_005730_100 Hb_000891_080 Hb_000891_080 Hb_002890_190--Hb_000891_080 Hb_116436_010 Hb_116436_010 Hb_002890_190--Hb_116436_010 Hb_029980_010 Hb_029980_010 Hb_002890_190--Hb_029980_010 Hb_007382_020 Hb_007382_020 Hb_002890_190--Hb_007382_020 Hb_000107_130 Hb_000107_130 Hb_002890_190--Hb_000107_130 Hb_000318_260 Hb_000318_260 Hb_000424_160--Hb_000318_260 Hb_085375_010 Hb_085375_010 Hb_000424_160--Hb_085375_010 Hb_000976_180 Hb_000976_180 Hb_000424_160--Hb_000976_180 Hb_003320_030 Hb_003320_030 Hb_000424_160--Hb_003320_030 Hb_004712_110 Hb_004712_110 Hb_000424_160--Hb_004712_110 Hb_043629_020 Hb_043629_020 Hb_003462_010--Hb_043629_020 Hb_000115_170 Hb_000115_170 Hb_003462_010--Hb_000115_170 Hb_000227_420 Hb_000227_420 Hb_003462_010--Hb_000227_420 Hb_002232_200 Hb_002232_200 Hb_003462_010--Hb_002232_200 Hb_003462_010--Hb_027751_050 Hb_000005_040 Hb_000005_040 Hb_005730_080--Hb_000005_040 Hb_005730_080--Hb_002232_200 Hb_002900_060 Hb_002900_060 Hb_005730_080--Hb_002900_060 Hb_002260_190 Hb_002260_190 Hb_005730_080--Hb_002260_190 Hb_002022_050 Hb_002022_050 Hb_005730_080--Hb_002022_050 Hb_002595_100 Hb_002595_100 Hb_005730_080--Hb_002595_100 Hb_002073_070 Hb_002073_070 Hb_027751_050--Hb_002073_070 Hb_027751_050--Hb_002595_100 Hb_027751_050--Hb_002900_060 Hb_013394_090 Hb_013394_090 Hb_027751_050--Hb_013394_090 Hb_000861_090 Hb_000861_090 Hb_027751_050--Hb_000861_090 Hb_000005_120 Hb_000005_120 Hb_027751_050--Hb_000005_120 Hb_153558_010--Hb_005730_080 Hb_153558_010--Hb_002260_190 Hb_153558_010--Hb_002022_050 Hb_153558_010--Hb_002232_200 Hb_153558_010--Hb_003462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28024 0.614694 2.21905 0.640051 69.1654 4.20769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.681808 0.503458 2.39821 0.175632 4.27107

CAGE analysis