Hb_043629_020

Information

Type -
Description -
Location Contig43629: 2461-3719
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13360g
description POPTRDRAFT_876512; hypothetical protein
nr
ID XP_002312977.2
description hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID B9HR94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13360g PE=4 SV=2
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043629_020 0.0 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
2 Hb_000227_420 0.1327480114 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
3 Hb_000115_170 0.1727838352 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
4 Hb_003462_010 0.205687058 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_003992_260 0.2176350726 - - PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Jatropha curcas]
6 Hb_005116_020 0.2179906369 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
7 Hb_002232_200 0.2268929362 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
8 Hb_006846_090 0.2449362488 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
9 Hb_002983_100 0.2454541129 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
10 Hb_003320_030 0.2462604154 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000123_390 0.2597258917 - - conserved hypothetical protein [Ricinus communis]
12 Hb_164732_010 0.261816121 - - -
13 Hb_006846_100 0.2643069137 - - hypothetical protein POPTR_0012s11270g [Populus trichocarpa]
14 Hb_000567_160 0.2681260922 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
15 Hb_001159_210 0.2759861349 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
16 Hb_001584_230 0.2765159365 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
17 Hb_058884_010 0.2777169021 - - PREDICTED: barwin-like [Jatropha curcas]
18 Hb_005730_080 0.2802996083 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
19 Hb_141838_010 0.2819649681 - - -
20 Hb_000317_080 0.2820749638 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]

Gene co-expression network

sample Hb_043629_020 Hb_043629_020 Hb_000227_420 Hb_000227_420 Hb_043629_020--Hb_000227_420 Hb_000115_170 Hb_000115_170 Hb_043629_020--Hb_000115_170 Hb_003462_010 Hb_003462_010 Hb_043629_020--Hb_003462_010 Hb_003992_260 Hb_003992_260 Hb_043629_020--Hb_003992_260 Hb_005116_020 Hb_005116_020 Hb_043629_020--Hb_005116_020 Hb_002232_200 Hb_002232_200 Hb_043629_020--Hb_002232_200 Hb_000227_420--Hb_000115_170 Hb_000227_420--Hb_002232_200 Hb_000227_420--Hb_003992_260 Hb_007382_020 Hb_007382_020 Hb_000227_420--Hb_007382_020 Hb_000227_420--Hb_003462_010 Hb_000115_170--Hb_002232_200 Hb_000115_170--Hb_005116_020 Hb_000115_170--Hb_007382_020 Hb_005730_080 Hb_005730_080 Hb_000115_170--Hb_005730_080 Hb_003462_010--Hb_000115_170 Hb_000345_120 Hb_000345_120 Hb_003462_010--Hb_000345_120 Hb_003462_010--Hb_002232_200 Hb_027751_050 Hb_027751_050 Hb_003462_010--Hb_027751_050 Hb_006846_100 Hb_006846_100 Hb_003992_260--Hb_006846_100 Hb_004846_180 Hb_004846_180 Hb_003992_260--Hb_004846_180 Hb_001723_110 Hb_001723_110 Hb_003992_260--Hb_001723_110 Hb_003992_260--Hb_007382_020 Hb_006846_090 Hb_006846_090 Hb_003992_260--Hb_006846_090 Hb_002983_100 Hb_002983_100 Hb_005116_020--Hb_002983_100 Hb_134732_010 Hb_134732_010 Hb_005116_020--Hb_134732_010 Hb_003320_030 Hb_003320_030 Hb_005116_020--Hb_003320_030 Hb_001159_210 Hb_001159_210 Hb_005116_020--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_005116_020--Hb_000038_150 Hb_029866_010 Hb_029866_010 Hb_005116_020--Hb_029866_010 Hb_000005_040 Hb_000005_040 Hb_002232_200--Hb_000005_040 Hb_002900_060 Hb_002900_060 Hb_002232_200--Hb_002900_060 Hb_002232_200--Hb_005730_080 Hb_002022_050 Hb_002022_050 Hb_002232_200--Hb_002022_050 Hb_002260_190 Hb_002260_190 Hb_002232_200--Hb_002260_190 Hb_001142_020 Hb_001142_020 Hb_002232_200--Hb_001142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.536775 0.0522254 0 0 7.89771 2.192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.143291 0.337987 0.507321 0.296886 0

CAGE analysis