Hb_006846_100

Information

Type -
Description -
Location Contig6846: 89481-90487
Sequence    

Annotation

kegg
ID pop:POPTR_0012s11270g
description POPTRDRAFT_570385; hypothetical protein
nr
ID XP_002318187.2
description hypothetical protein POPTR_0012s11270g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I432
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11270g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_100 0.0 - - hypothetical protein POPTR_0012s11270g [Populus trichocarpa]
2 Hb_003992_260 0.17269591 - - PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Jatropha curcas]
3 Hb_009680_030 0.2519009826 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
4 Hb_043629_020 0.2643069137 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
5 Hb_006846_090 0.2658861912 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
6 Hb_002311_250 0.2678000276 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
7 Hb_000115_170 0.2774643179 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
8 Hb_004645_040 0.2777226237 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
9 Hb_002374_440 0.2805825738 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008749_050 0.2823263539 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
11 Hb_001723_110 0.2832485439 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
12 Hb_007382_020 0.2872700978 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
13 Hb_003462_010 0.2886925562 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000227_420 0.289708228 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
15 Hb_004348_010 0.289710924 - - hypothetical protein POPTR_0077s002302g, partial [Populus trichocarpa]
16 Hb_001769_020 0.2900248383 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
17 Hb_029388_040 0.2968709287 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
18 Hb_025194_030 0.2970447909 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
19 Hb_000567_160 0.298197882 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
20 Hb_004846_180 0.2997268786 - - heat shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006846_100 Hb_006846_100 Hb_003992_260 Hb_003992_260 Hb_006846_100--Hb_003992_260 Hb_009680_030 Hb_009680_030 Hb_006846_100--Hb_009680_030 Hb_043629_020 Hb_043629_020 Hb_006846_100--Hb_043629_020 Hb_006846_090 Hb_006846_090 Hb_006846_100--Hb_006846_090 Hb_002311_250 Hb_002311_250 Hb_006846_100--Hb_002311_250 Hb_000115_170 Hb_000115_170 Hb_006846_100--Hb_000115_170 Hb_004846_180 Hb_004846_180 Hb_003992_260--Hb_004846_180 Hb_001723_110 Hb_001723_110 Hb_003992_260--Hb_001723_110 Hb_007382_020 Hb_007382_020 Hb_003992_260--Hb_007382_020 Hb_003992_260--Hb_006846_090 Hb_003992_260--Hb_043629_020 Hb_009680_030--Hb_006846_090 Hb_002983_020 Hb_002983_020 Hb_009680_030--Hb_002983_020 Hb_019153_040 Hb_019153_040 Hb_009680_030--Hb_019153_040 Hb_009680_030--Hb_002311_250 Hb_010931_110 Hb_010931_110 Hb_009680_030--Hb_010931_110 Hb_000300_530 Hb_000300_530 Hb_009680_030--Hb_000300_530 Hb_000227_420 Hb_000227_420 Hb_043629_020--Hb_000227_420 Hb_043629_020--Hb_000115_170 Hb_003462_010 Hb_003462_010 Hb_043629_020--Hb_003462_010 Hb_005116_020 Hb_005116_020 Hb_043629_020--Hb_005116_020 Hb_002232_200 Hb_002232_200 Hb_043629_020--Hb_002232_200 Hb_006846_090--Hb_002983_020 Hb_006846_090--Hb_002311_250 Hb_000317_080 Hb_000317_080 Hb_006846_090--Hb_000317_080 Hb_029388_040 Hb_029388_040 Hb_006846_090--Hb_029388_040 Hb_164732_010 Hb_164732_010 Hb_006846_090--Hb_164732_010 Hb_011457_160 Hb_011457_160 Hb_002311_250--Hb_011457_160 Hb_001946_360 Hb_001946_360 Hb_002311_250--Hb_001946_360 Hb_011344_010 Hb_011344_010 Hb_002311_250--Hb_011344_010 Hb_002374_440 Hb_002374_440 Hb_002311_250--Hb_002374_440 Hb_002239_040 Hb_002239_040 Hb_002311_250--Hb_002239_040 Hb_000115_170--Hb_000227_420 Hb_000115_170--Hb_002232_200 Hb_000115_170--Hb_005116_020 Hb_000115_170--Hb_007382_020 Hb_005730_080 Hb_005730_080 Hb_000115_170--Hb_005730_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0901052 0.181383 0 0 1.40833 0.223196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.258213 0.212828 0.0543918 0

CAGE analysis