Hb_003462_010

Information

Type -
Description -
Location Contig3462: 1526-11665
Sequence    

Annotation

kegg
ID rcu:RCOM_1353350
description WD-repeat protein, putative (EC:2.7.11.7)
nr
ID XP_002519449.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q8BHB4
description WD repeat-containing protein 3 OS=Mus musculus GN=Wdr3 PE=2 SV=1
trembl
ID B9S0D0
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1353350 PE=4 SV=1
Gene Ontology
ID GO:0008152
description wd repeat-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_010 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_043629_020 0.205687058 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
3 Hb_000115_170 0.2264423969 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
4 Hb_000345_120 0.2300370086 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]
5 Hb_000227_420 0.2349843835 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
6 Hb_002232_200 0.2434727687 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
7 Hb_027751_050 0.2487805224 - - hypothetical protein JCGZ_05887 [Jatropha curcas]
8 Hb_000424_160 0.2503536667 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
9 Hb_002900_060 0.2640884331 - - CI small heat shock protein 2 [Prunus salicina]
10 Hb_153558_010 0.2688165458 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
11 Hb_005730_080 0.2692524241 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
12 Hb_000005_040 0.2738656947 - - PREDICTED: histone H2B.2 [Jatropha curcas]
13 Hb_002983_100 0.2783703241 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
14 Hb_007127_010 0.288479011 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
15 Hb_006846_100 0.2886925562 - - hypothetical protein POPTR_0012s11270g [Populus trichocarpa]
16 Hb_002595_100 0.2916815807 - - heat-shock protein, putative [Ricinus communis]
17 Hb_005116_020 0.2931692441 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
18 Hb_002260_190 0.2959185305 - - -
19 Hb_002022_050 0.2974646357 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
20 Hb_000567_160 0.2986808014 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_003462_010 Hb_003462_010 Hb_043629_020 Hb_043629_020 Hb_003462_010--Hb_043629_020 Hb_000115_170 Hb_000115_170 Hb_003462_010--Hb_000115_170 Hb_000345_120 Hb_000345_120 Hb_003462_010--Hb_000345_120 Hb_000227_420 Hb_000227_420 Hb_003462_010--Hb_000227_420 Hb_002232_200 Hb_002232_200 Hb_003462_010--Hb_002232_200 Hb_027751_050 Hb_027751_050 Hb_003462_010--Hb_027751_050 Hb_043629_020--Hb_000227_420 Hb_043629_020--Hb_000115_170 Hb_003992_260 Hb_003992_260 Hb_043629_020--Hb_003992_260 Hb_005116_020 Hb_005116_020 Hb_043629_020--Hb_005116_020 Hb_043629_020--Hb_002232_200 Hb_000115_170--Hb_000227_420 Hb_000115_170--Hb_002232_200 Hb_000115_170--Hb_005116_020 Hb_007382_020 Hb_007382_020 Hb_000115_170--Hb_007382_020 Hb_005730_080 Hb_005730_080 Hb_000115_170--Hb_005730_080 Hb_002890_190 Hb_002890_190 Hb_000345_120--Hb_002890_190 Hb_000424_160 Hb_000424_160 Hb_000345_120--Hb_000424_160 Hb_000345_120--Hb_005730_080 Hb_000345_120--Hb_027751_050 Hb_153558_010 Hb_153558_010 Hb_000345_120--Hb_153558_010 Hb_000227_420--Hb_002232_200 Hb_000227_420--Hb_003992_260 Hb_000227_420--Hb_007382_020 Hb_000005_040 Hb_000005_040 Hb_002232_200--Hb_000005_040 Hb_002900_060 Hb_002900_060 Hb_002232_200--Hb_002900_060 Hb_002232_200--Hb_005730_080 Hb_002022_050 Hb_002022_050 Hb_002232_200--Hb_002022_050 Hb_002260_190 Hb_002260_190 Hb_002232_200--Hb_002260_190 Hb_001142_020 Hb_001142_020 Hb_002232_200--Hb_001142_020 Hb_002073_070 Hb_002073_070 Hb_027751_050--Hb_002073_070 Hb_002595_100 Hb_002595_100 Hb_027751_050--Hb_002595_100 Hb_027751_050--Hb_002900_060 Hb_013394_090 Hb_013394_090 Hb_027751_050--Hb_013394_090 Hb_000861_090 Hb_000861_090 Hb_027751_050--Hb_000861_090 Hb_000005_120 Hb_000005_120 Hb_027751_050--Hb_000005_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.220459 0 0.137916 0 4.38652 0.400829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.157283 0.25153 0.134852 0

CAGE analysis