Hb_002900_060

Information

Type -
Description -
Location Contig2900: 110700-111394
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012795mg
description hypothetical protein
nr
ID ACV93249.1
description CI small heat shock protein 2 [Prunus salicina]
swissprot
ID P27879
description 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1
trembl
ID C9EIM4
description CI small heat shock protein 2 OS=Prunus salicina PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_060 0.0 - - CI small heat shock protein 2 [Prunus salicina]
2 Hb_000005_040 0.07740532 - - PREDICTED: histone H2B.2 [Jatropha curcas]
3 Hb_002595_100 0.0791298457 - - heat-shock protein, putative [Ricinus communis]
4 Hb_002260_190 0.1064820104 - - -
5 Hb_002022_050 0.111980964 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
6 Hb_002073_070 0.1411150964 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
7 Hb_002232_200 0.1513287228 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
8 Hb_005730_080 0.1617661988 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
9 Hb_116436_010 0.193233944 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
10 Hb_001142_020 0.2051864028 - - -
11 Hb_007127_010 0.2067171747 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
12 Hb_155911_010 0.2104565035 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
13 Hb_000005_120 0.2112119393 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
14 Hb_000011_130 0.2112119393 - - lipase [Ricinus communis]
15 Hb_000046_140 0.2112119393 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000081_070 0.2112119393 - - -
17 Hb_000171_010 0.2112119393 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_000189_040 0.2112119393 - - hypothetical protein [Trichoderma aureoviride]
19 Hb_000210_170 0.2112119393 - - -
20 Hb_000252_010 0.2112119393 - - -

Gene co-expression network

sample Hb_002900_060 Hb_002900_060 Hb_000005_040 Hb_000005_040 Hb_002900_060--Hb_000005_040 Hb_002595_100 Hb_002595_100 Hb_002900_060--Hb_002595_100 Hb_002260_190 Hb_002260_190 Hb_002900_060--Hb_002260_190 Hb_002022_050 Hb_002022_050 Hb_002900_060--Hb_002022_050 Hb_002073_070 Hb_002073_070 Hb_002900_060--Hb_002073_070 Hb_002232_200 Hb_002232_200 Hb_002900_060--Hb_002232_200 Hb_000005_040--Hb_002260_190 Hb_000005_040--Hb_002022_050 Hb_000005_040--Hb_002595_100 Hb_000005_040--Hb_002232_200 Hb_001142_020 Hb_001142_020 Hb_000005_040--Hb_001142_020 Hb_002595_100--Hb_002260_190 Hb_002595_100--Hb_002022_050 Hb_002595_100--Hb_002073_070 Hb_005730_080 Hb_005730_080 Hb_002595_100--Hb_005730_080 Hb_002260_190--Hb_002022_050 Hb_002260_190--Hb_001142_020 Hb_155911_010 Hb_155911_010 Hb_002260_190--Hb_155911_010 Hb_002022_050--Hb_001142_020 Hb_002022_050--Hb_155911_010 Hb_000005_120 Hb_000005_120 Hb_002073_070--Hb_000005_120 Hb_000011_130 Hb_000011_130 Hb_002073_070--Hb_000011_130 Hb_000046_140 Hb_000046_140 Hb_002073_070--Hb_000046_140 Hb_000081_070 Hb_000081_070 Hb_002073_070--Hb_000081_070 Hb_000171_010 Hb_000171_010 Hb_002073_070--Hb_000171_010 Hb_000189_040 Hb_000189_040 Hb_002073_070--Hb_000189_040 Hb_002232_200--Hb_005730_080 Hb_002232_200--Hb_002022_050 Hb_002232_200--Hb_002260_190 Hb_002232_200--Hb_001142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.374982 0 0 0 28.9523 2.36326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis