Hb_000005_120

Information

Type transcription factor
Description TF Family: C2H2
Location Contig5: 150773-151942
Sequence    

Annotation

kegg
ID tcc:TCM_041585
description C2H2 and C2HC zinc fingers superfamily protein, putative
nr
ID XP_012065093.1
description PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
swissprot
ID Q9C8N5
description Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1
trembl
ID A0A061GZV2
description C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=TCM_041585 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein sensitive to proton rhizotoxicity 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_120 0.0 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
2 Hb_000011_130 0.0 - - lipase [Ricinus communis]
3 Hb_000046_140 0.0 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000081_070 0.0 - - -
5 Hb_000171_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_000189_040 0.0 - - hypothetical protein [Trichoderma aureoviride]
7 Hb_000210_170 0.0 - - -
8 Hb_000252_010 0.0 - - -
9 Hb_000288_040 0.0 - - -
10 Hb_000300_490 0.0 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000317_500 0.0 - - -
12 Hb_000329_680 0.0 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
13 Hb_000401_060 0.0 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
14 Hb_000603_090 0.0 - - -
15 Hb_000700_050 0.0 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X5 [Jatropha curcas]
16 Hb_000701_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_000747_020 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
18 Hb_000749_210 0.0 - - PREDICTED: general transcription factor 3C polypeptide 6 isoform X3 [Jatropha curcas]
19 Hb_000762_030 0.0 - - -
20 Hb_000798_020 0.0 - - oligopeptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000005_120 Hb_000005_120 Hb_000011_130 Hb_000011_130 Hb_000005_120--Hb_000011_130 Hb_000046_140 Hb_000046_140 Hb_000005_120--Hb_000046_140 Hb_000081_070 Hb_000081_070 Hb_000005_120--Hb_000081_070 Hb_000171_010 Hb_000171_010 Hb_000005_120--Hb_000171_010 Hb_000189_040 Hb_000189_040 Hb_000005_120--Hb_000189_040 Hb_000210_170 Hb_000210_170 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0171504 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis