Hb_013394_090

Information

Type -
Description -
Location Contig13394: 92759-94925
Sequence    

Annotation

kegg
ID rcu:RCOM_0664390
description hypothetical protein
nr
ID XP_002533318.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T4Z9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0664390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09554: 92169-92270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005730_080 0.2009922772 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
3 Hb_002595_100 0.2126278212 - - heat-shock protein, putative [Ricinus communis]
4 Hb_002890_190 0.220990747 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
5 Hb_116436_010 0.2213818752 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
6 Hb_002073_070 0.2257204622 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
7 Hb_000005_040 0.2272859437 - - PREDICTED: histone H2B.2 [Jatropha curcas]
8 Hb_002900_060 0.22761719 - - CI small heat shock protein 2 [Prunus salicina]
9 Hb_000107_130 0.228225404 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_002260_190 0.2383521361 - - -
11 Hb_027751_050 0.2385825009 - - hypothetical protein JCGZ_05887 [Jatropha curcas]
12 Hb_000060_110 0.2408861156 - - PREDICTED: uncharacterized protein LOC105649714 [Jatropha curcas]
13 Hb_002022_050 0.2418886475 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
14 Hb_000005_120 0.2663048388 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
15 Hb_000011_130 0.2663048388 - - lipase [Ricinus communis]
16 Hb_000046_140 0.2663048388 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000081_070 0.2663048388 - - -
18 Hb_000171_010 0.2663048388 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_000189_040 0.2663048388 - - hypothetical protein [Trichoderma aureoviride]
20 Hb_000210_170 0.2663048388 - - -

Gene co-expression network

sample Hb_013394_090 Hb_013394_090 Hb_005730_080 Hb_005730_080 Hb_013394_090--Hb_005730_080 Hb_002595_100 Hb_002595_100 Hb_013394_090--Hb_002595_100 Hb_002890_190 Hb_002890_190 Hb_013394_090--Hb_002890_190 Hb_116436_010 Hb_116436_010 Hb_013394_090--Hb_116436_010 Hb_002073_070 Hb_002073_070 Hb_013394_090--Hb_002073_070 Hb_000005_040 Hb_000005_040 Hb_013394_090--Hb_000005_040 Hb_005730_080--Hb_000005_040 Hb_002232_200 Hb_002232_200 Hb_005730_080--Hb_002232_200 Hb_002900_060 Hb_002900_060 Hb_005730_080--Hb_002900_060 Hb_002260_190 Hb_002260_190 Hb_005730_080--Hb_002260_190 Hb_002022_050 Hb_002022_050 Hb_005730_080--Hb_002022_050 Hb_005730_080--Hb_002595_100 Hb_002595_100--Hb_002900_060 Hb_002595_100--Hb_002260_190 Hb_002595_100--Hb_002022_050 Hb_002595_100--Hb_002073_070 Hb_002595_100--Hb_000005_040 Hb_005730_100 Hb_005730_100 Hb_002890_190--Hb_005730_100 Hb_000891_080 Hb_000891_080 Hb_002890_190--Hb_000891_080 Hb_002890_190--Hb_116436_010 Hb_029980_010 Hb_029980_010 Hb_002890_190--Hb_029980_010 Hb_007382_020 Hb_007382_020 Hb_002890_190--Hb_007382_020 Hb_000107_130 Hb_000107_130 Hb_002890_190--Hb_000107_130 Hb_007127_010 Hb_007127_010 Hb_116436_010--Hb_007127_010 Hb_116436_010--Hb_000107_130 Hb_001104_040 Hb_001104_040 Hb_116436_010--Hb_001104_040 Hb_092043_020 Hb_092043_020 Hb_116436_010--Hb_092043_020 Hb_116436_010--Hb_002900_060 Hb_000005_120 Hb_000005_120 Hb_002073_070--Hb_000005_120 Hb_000011_130 Hb_000011_130 Hb_002073_070--Hb_000011_130 Hb_000046_140 Hb_000046_140 Hb_002073_070--Hb_000046_140 Hb_000081_070 Hb_000081_070 Hb_002073_070--Hb_000081_070 Hb_000171_010 Hb_000171_010 Hb_002073_070--Hb_000171_010 Hb_000189_040 Hb_000189_040 Hb_002073_070--Hb_000189_040 Hb_000005_040--Hb_002260_190 Hb_000005_040--Hb_002022_050 Hb_000005_040--Hb_002900_060 Hb_000005_040--Hb_002232_200 Hb_001142_020 Hb_001142_020 Hb_000005_040--Hb_001142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0673455 0 0.092288 2.09113 0.11629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0498864 0

CAGE analysis