Hb_000891_080

Information

Type -
Description -
Location Contig891: 120595-122715
Sequence    

Annotation

kegg
ID pop:POPTR_0007s00600g
description POPTRDRAFT_216113; hypothetical protein
nr
ID XP_011011693.1
description PREDICTED: TMV resistance protein N-like, partial [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HGH2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s00600g PE=4 SV=2
Gene Ontology
ID GO:0005488
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000891_080 0.0 - - PREDICTED: TMV resistance protein N-like, partial [Populus euphratica]
2 Hb_005730_100 0.1447605033 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
3 Hb_002890_190 0.1598476855 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
4 Hb_116436_010 0.1954151149 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
5 Hb_001104_040 0.212326051 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
6 Hb_029980_010 0.2166503544 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
7 Hb_092043_020 0.2245304486 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
8 Hb_004529_020 0.2344281506 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
9 Hb_000107_130 0.2479973532 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_000488_030 0.2495165531 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
11 Hb_023528_010 0.257472414 - - hypothetical protein POPTR_0013s01580g [Populus trichocarpa]
12 Hb_005730_080 0.2621227766 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
13 Hb_007127_010 0.2677000885 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
14 Hb_000398_130 0.2719305383 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
15 Hb_000060_110 0.2719389828 - - PREDICTED: uncharacterized protein LOC105649714 [Jatropha curcas]
16 Hb_029508_010 0.27514525 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
17 Hb_000046_220 0.2772257417 - - -
18 Hb_125948_020 0.2779000332 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
19 Hb_003793_050 0.280323559 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
20 Hb_000345_120 0.280841008 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]

Gene co-expression network

sample Hb_000891_080 Hb_000891_080 Hb_005730_100 Hb_005730_100 Hb_000891_080--Hb_005730_100 Hb_002890_190 Hb_002890_190 Hb_000891_080--Hb_002890_190 Hb_116436_010 Hb_116436_010 Hb_000891_080--Hb_116436_010 Hb_001104_040 Hb_001104_040 Hb_000891_080--Hb_001104_040 Hb_029980_010 Hb_029980_010 Hb_000891_080--Hb_029980_010 Hb_092043_020 Hb_092043_020 Hb_000891_080--Hb_092043_020 Hb_005730_100--Hb_002890_190 Hb_005730_100--Hb_029980_010 Hb_000488_030 Hb_000488_030 Hb_005730_100--Hb_000488_030 Hb_005730_100--Hb_001104_040 Hb_000398_130 Hb_000398_130 Hb_005730_100--Hb_000398_130 Hb_002890_190--Hb_116436_010 Hb_002890_190--Hb_029980_010 Hb_007382_020 Hb_007382_020 Hb_002890_190--Hb_007382_020 Hb_000107_130 Hb_000107_130 Hb_002890_190--Hb_000107_130 Hb_007127_010 Hb_007127_010 Hb_116436_010--Hb_007127_010 Hb_116436_010--Hb_000107_130 Hb_116436_010--Hb_001104_040 Hb_116436_010--Hb_092043_020 Hb_002900_060 Hb_002900_060 Hb_116436_010--Hb_002900_060 Hb_001279_230 Hb_001279_230 Hb_001104_040--Hb_001279_230 Hb_004529_020 Hb_004529_020 Hb_001104_040--Hb_004529_020 Hb_003647_120 Hb_003647_120 Hb_001104_040--Hb_003647_120 Hb_001104_040--Hb_092043_020 Hb_048207_010 Hb_048207_010 Hb_001104_040--Hb_048207_010 Hb_000046_220 Hb_000046_220 Hb_029980_010--Hb_000046_220 Hb_168893_010 Hb_168893_010 Hb_029980_010--Hb_168893_010 Hb_029980_010--Hb_000488_030 Hb_092043_020--Hb_004529_020 Hb_023528_010 Hb_023528_010 Hb_092043_020--Hb_023528_010 Hb_003793_050 Hb_003793_050 Hb_092043_020--Hb_003793_050 Hb_010555_020 Hb_010555_020 Hb_092043_020--Hb_010555_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200124 0.13348 0 0 0.930787 0.0528246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0740671

CAGE analysis