Hb_023528_010

Information

Type -
Description -
Location Contig23528: 483-695
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01580g
description POPTRDRAFT_806761; hypothetical protein
nr
ID XP_002318984.2
description hypothetical protein POPTR_0013s01580g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I7C5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01580g PE=4 SV=2
Gene Ontology
ID GO:0006979
description plant t22k18-16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023528_010 0.0 - - hypothetical protein POPTR_0013s01580g [Populus trichocarpa]
2 Hb_004529_020 0.0806040021 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
3 Hb_092043_020 0.1113808591 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
4 Hb_003793_050 0.137266952 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
5 Hb_007943_010 0.1559737971 - - -
6 Hb_125948_020 0.1623869178 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
7 Hb_001104_040 0.2083580206 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
8 Hb_003392_010 0.2109662003 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_049827_010 0.2132903904 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
10 Hb_006387_010 0.2160408675 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
11 Hb_001863_210 0.2226332543 - - -
12 Hb_185830_100 0.2238099786 - - -
13 Hb_002708_010 0.2251179743 - - -
14 Hb_102355_010 0.2417950822 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
15 Hb_086484_010 0.245190717 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
16 Hb_010555_020 0.2513278979 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
17 Hb_116436_010 0.2524933092 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
18 Hb_000891_080 0.257472414 - - PREDICTED: TMV resistance protein N-like, partial [Populus euphratica]
19 Hb_038190_040 0.2605010585 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
20 Hb_003637_030 0.2621437142 - - -

Gene co-expression network

sample Hb_023528_010 Hb_023528_010 Hb_004529_020 Hb_004529_020 Hb_023528_010--Hb_004529_020 Hb_092043_020 Hb_092043_020 Hb_023528_010--Hb_092043_020 Hb_003793_050 Hb_003793_050 Hb_023528_010--Hb_003793_050 Hb_007943_010 Hb_007943_010 Hb_023528_010--Hb_007943_010 Hb_125948_020 Hb_125948_020 Hb_023528_010--Hb_125948_020 Hb_001104_040 Hb_001104_040 Hb_023528_010--Hb_001104_040 Hb_004529_020--Hb_092043_020 Hb_004529_020--Hb_001104_040 Hb_004529_020--Hb_003793_050 Hb_004529_020--Hb_125948_020 Hb_004529_020--Hb_007943_010 Hb_092043_020--Hb_003793_050 Hb_116436_010 Hb_116436_010 Hb_092043_020--Hb_116436_010 Hb_092043_020--Hb_001104_040 Hb_010555_020 Hb_010555_020 Hb_092043_020--Hb_010555_020 Hb_003793_050--Hb_007943_010 Hb_003392_010 Hb_003392_010 Hb_003793_050--Hb_003392_010 Hb_049827_010 Hb_049827_010 Hb_003793_050--Hb_049827_010 Hb_007943_010--Hb_003392_010 Hb_007943_010--Hb_049827_010 Hb_006387_010 Hb_006387_010 Hb_007943_010--Hb_006387_010 Hb_001863_210 Hb_001863_210 Hb_007943_010--Hb_001863_210 Hb_185830_100 Hb_185830_100 Hb_007943_010--Hb_185830_100 Hb_002708_010 Hb_002708_010 Hb_007943_010--Hb_002708_010 Hb_125948_020--Hb_007943_010 Hb_125948_020--Hb_003392_010 Hb_125948_020--Hb_049827_010 Hb_004846_170 Hb_004846_170 Hb_125948_020--Hb_004846_170 Hb_001279_230 Hb_001279_230 Hb_001104_040--Hb_001279_230 Hb_001104_040--Hb_116436_010 Hb_003647_120 Hb_003647_120 Hb_001104_040--Hb_003647_120 Hb_048207_010 Hb_048207_010 Hb_001104_040--Hb_048207_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0745 360.715 0 0 984.197 8.85298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis