Hb_000046_220

Information

Type -
Description -
Location Contig46: 198418-199047
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_220 0.0 - - -
2 Hb_000488_030 0.2047980043 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
3 Hb_029980_010 0.2196715066 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
4 Hb_079297_010 0.2305911831 - - hypothetical protein VITISV_012409 [Vitis vinifera]
5 Hb_005730_100 0.2715974802 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
6 Hb_000891_080 0.2772257417 - - PREDICTED: TMV resistance protein N-like, partial [Populus euphratica]
7 Hb_002843_220 0.2774866044 - - PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
8 Hb_125948_020 0.3009588825 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
9 Hb_001235_100 0.3144396137 - - heat-shock protein, putative [Ricinus communis]
10 Hb_008556_020 0.3172126846 - - -
11 Hb_048207_010 0.3227124486 - - heat-shock protein, putative [Ricinus communis]
12 Hb_000398_130 0.326854797 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
13 Hb_029508_010 0.3312431614 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
14 Hb_006745_020 0.3327149592 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
15 Hb_000302_300 0.3371803788 - - PREDICTED: heat shock protein 83 [Populus euphratica]
16 Hb_005344_010 0.340707534 - - PREDICTED: uncharacterized protein LOC102597679 [Solanum tuberosum]
17 Hb_000140_370 0.3410321608 - - PREDICTED: BAG family molecular chaperone regulator 6 [Jatropha curcas]
18 Hb_005962_010 0.3428220261 - - -
19 Hb_020247_050 0.3437799496 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
20 Hb_168893_010 0.3446662135 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_000046_220 Hb_000046_220 Hb_000488_030 Hb_000488_030 Hb_000046_220--Hb_000488_030 Hb_029980_010 Hb_029980_010 Hb_000046_220--Hb_029980_010 Hb_079297_010 Hb_079297_010 Hb_000046_220--Hb_079297_010 Hb_005730_100 Hb_005730_100 Hb_000046_220--Hb_005730_100 Hb_000891_080 Hb_000891_080 Hb_000046_220--Hb_000891_080 Hb_002843_220 Hb_002843_220 Hb_000046_220--Hb_002843_220 Hb_006745_020 Hb_006745_020 Hb_000488_030--Hb_006745_020 Hb_000488_030--Hb_005730_100 Hb_000488_030--Hb_079297_010 Hb_000398_130 Hb_000398_130 Hb_000488_030--Hb_000398_130 Hb_000488_030--Hb_029980_010 Hb_029980_010--Hb_005730_100 Hb_002890_190 Hb_002890_190 Hb_029980_010--Hb_002890_190 Hb_029980_010--Hb_000891_080 Hb_168893_010 Hb_168893_010 Hb_029980_010--Hb_168893_010 Hb_125948_020 Hb_125948_020 Hb_079297_010--Hb_125948_020 Hb_004846_170 Hb_004846_170 Hb_079297_010--Hb_004846_170 Hb_001269_560 Hb_001269_560 Hb_079297_010--Hb_001269_560 Hb_049827_010 Hb_049827_010 Hb_079297_010--Hb_049827_010 Hb_005730_100--Hb_002890_190 Hb_005730_100--Hb_000891_080 Hb_001104_040 Hb_001104_040 Hb_005730_100--Hb_001104_040 Hb_005730_100--Hb_000398_130 Hb_000891_080--Hb_002890_190 Hb_116436_010 Hb_116436_010 Hb_000891_080--Hb_116436_010 Hb_000891_080--Hb_001104_040 Hb_092043_020 Hb_092043_020 Hb_000891_080--Hb_092043_020 Hb_000302_300 Hb_000302_300 Hb_002843_220--Hb_000302_300 Hb_020094_020 Hb_020094_020 Hb_002843_220--Hb_020094_020 Hb_020247_050 Hb_020247_050 Hb_002843_220--Hb_020247_050 Hb_000796_050 Hb_000796_050 Hb_002843_220--Hb_000796_050 Hb_006721_070 Hb_006721_070 Hb_002843_220--Hb_006721_070 Hb_006573_010 Hb_006573_010 Hb_002843_220--Hb_006573_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.240176 0.0327399 0 0.576667 0.0576512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0302099 0.144032

CAGE analysis