Hb_001276_020

Information

Type -
Description -
Location Contig1276: 18630-28925
Sequence    

Annotation

kegg
ID tcc:TCM_044860
description hypothetical protein
nr
ID CAN81294.1
description hypothetical protein VITISV_003263 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BMX7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003263 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein VITISV_003263

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001276_020 0.0 - - hypothetical protein VITISV_003263 [Vitis vinifera]
2 Hb_002267_090 0.1596128872 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
3 Hb_000661_160 0.1650921981 - - hexokinase [Manihot esculenta]
4 Hb_000025_070 0.1701755113 - - Uncharacterized protein TCM_040985 [Theobroma cacao]
5 Hb_004032_060 0.1795183494 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
6 Hb_006634_040 0.1821123131 - - hypothetical protein VITISV_030841 [Vitis vinifera]
7 Hb_005271_080 0.1823793276 - - receptor kinase, putative [Ricinus communis]
8 Hb_000621_060 0.1991316927 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
9 Hb_089889_020 0.2014720851 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
10 Hb_012867_010 0.2035234272 - - Vacuolar protein sorting 45 [Theobroma cacao]
11 Hb_000062_380 0.2041872058 - - PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]
12 Hb_001279_330 0.2042782488 - - Protein bem46, putative [Ricinus communis]
13 Hb_003788_050 0.2064717596 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
14 Hb_097783_020 0.2102014613 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
15 Hb_024505_020 0.2113963984 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
16 Hb_000307_170 0.2121065838 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
17 Hb_002235_150 0.213114431 - - -
18 Hb_009801_010 0.2133431583 - - ATPase inhibitor, putative [Ricinus communis]
19 Hb_000920_280 0.2136092337 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
20 Hb_025236_040 0.2139535698 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001276_020 Hb_001276_020 Hb_002267_090 Hb_002267_090 Hb_001276_020--Hb_002267_090 Hb_000661_160 Hb_000661_160 Hb_001276_020--Hb_000661_160 Hb_000025_070 Hb_000025_070 Hb_001276_020--Hb_000025_070 Hb_004032_060 Hb_004032_060 Hb_001276_020--Hb_004032_060 Hb_006634_040 Hb_006634_040 Hb_001276_020--Hb_006634_040 Hb_005271_080 Hb_005271_080 Hb_001276_020--Hb_005271_080 Hb_000920_280 Hb_000920_280 Hb_002267_090--Hb_000920_280 Hb_001279_330 Hb_001279_330 Hb_002267_090--Hb_001279_330 Hb_000617_220 Hb_000617_220 Hb_002267_090--Hb_000617_220 Hb_000640_220 Hb_000640_220 Hb_002267_090--Hb_000640_220 Hb_006623_020 Hb_006623_020 Hb_002267_090--Hb_006623_020 Hb_001754_240 Hb_001754_240 Hb_002267_090--Hb_001754_240 Hb_000211_110 Hb_000211_110 Hb_000661_160--Hb_000211_110 Hb_000261_110 Hb_000261_110 Hb_000661_160--Hb_000261_110 Hb_009111_040 Hb_009111_040 Hb_000661_160--Hb_009111_040 Hb_000313_300 Hb_000313_300 Hb_000661_160--Hb_000313_300 Hb_000106_130 Hb_000106_130 Hb_000661_160--Hb_000106_130 Hb_000661_160--Hb_004032_060 Hb_000025_070--Hb_006634_040 Hb_003376_080 Hb_003376_080 Hb_000025_070--Hb_003376_080 Hb_130323_010 Hb_130323_010 Hb_000025_070--Hb_130323_010 Hb_000300_320 Hb_000300_320 Hb_000025_070--Hb_000300_320 Hb_002027_020 Hb_002027_020 Hb_000025_070--Hb_002027_020 Hb_000307_170 Hb_000307_170 Hb_004032_060--Hb_000307_170 Hb_001951_260 Hb_001951_260 Hb_004032_060--Hb_001951_260 Hb_000482_110 Hb_000482_110 Hb_004032_060--Hb_000482_110 Hb_004032_050 Hb_004032_050 Hb_004032_060--Hb_004032_050 Hb_000290_020 Hb_000290_020 Hb_004032_060--Hb_000290_020 Hb_025236_040 Hb_025236_040 Hb_004032_060--Hb_025236_040 Hb_009803_040 Hb_009803_040 Hb_006634_040--Hb_009803_040 Hb_000933_150 Hb_000933_150 Hb_006634_040--Hb_000933_150 Hb_005656_210 Hb_005656_210 Hb_006634_040--Hb_005656_210 Hb_006634_040--Hb_000661_160 Hb_003788_050 Hb_003788_050 Hb_006634_040--Hb_003788_050 Hb_001484_060 Hb_001484_060 Hb_006634_040--Hb_001484_060 Hb_005271_080--Hb_001279_330 Hb_005368_010 Hb_005368_010 Hb_005271_080--Hb_005368_010 Hb_000424_230 Hb_000424_230 Hb_005271_080--Hb_000424_230 Hb_001689_020 Hb_001689_020 Hb_005271_080--Hb_001689_020 Hb_000197_210 Hb_000197_210 Hb_005271_080--Hb_000197_210 Hb_000261_520 Hb_000261_520 Hb_005271_080--Hb_000261_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.251791 0.0405477 0.1382 0.20224 0.598684 0.356419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206656 0.21139 0 0.045252 0.068884

CAGE analysis