Hb_000025_070

Information

Type -
Description -
Location Contig25: 79130-82773
Sequence    

Annotation

kegg
ID tcc:TCM_040985
description hypothetical protein
nr
ID XP_007015359.1
description Uncharacterized protein TCM_040985 [Theobroma cacao]
swissprot
ID O82368
description Uncharacterized protein At2g29880 OS=Arabidopsis thaliana GN=At2g29880 PE=2 SV=1
trembl
ID A0A061GU73
description Uncharacterized protein OS=Theobroma cacao GN=TCM_040985 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_070 0.0 - - Uncharacterized protein TCM_040985 [Theobroma cacao]
2 Hb_001276_020 0.1701755113 - - hypothetical protein VITISV_003263 [Vitis vinifera]
3 Hb_006634_040 0.1730946429 - - hypothetical protein VITISV_030841 [Vitis vinifera]
4 Hb_003376_080 0.1827204308 - - PREDICTED: uncharacterized protein LOC105642190 isoform X1 [Jatropha curcas]
5 Hb_130323_010 0.1907962306 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
6 Hb_000300_320 0.1915200208 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
7 Hb_002027_020 0.1932360861 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
8 Hb_002267_090 0.194635254 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
9 Hb_162378_010 0.199400677 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
10 Hb_000983_170 0.2008282542 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
11 Hb_005656_210 0.2050890861 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
12 Hb_000661_160 0.208318779 - - hexokinase [Manihot esculenta]
13 Hb_000076_270 0.2106938423 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
14 Hb_011519_030 0.2110754771 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
15 Hb_000313_300 0.2113432359 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
16 Hb_003177_010 0.2131309205 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
17 Hb_001882_110 0.2147725363 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_003788_050 0.2156903945 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
19 Hb_030928_040 0.2160003875 - - RNA-binding protein, putative [Ricinus communis]
20 Hb_000265_220 0.2174644704 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_070 Hb_000025_070 Hb_001276_020 Hb_001276_020 Hb_000025_070--Hb_001276_020 Hb_006634_040 Hb_006634_040 Hb_000025_070--Hb_006634_040 Hb_003376_080 Hb_003376_080 Hb_000025_070--Hb_003376_080 Hb_130323_010 Hb_130323_010 Hb_000025_070--Hb_130323_010 Hb_000300_320 Hb_000300_320 Hb_000025_070--Hb_000300_320 Hb_002027_020 Hb_002027_020 Hb_000025_070--Hb_002027_020 Hb_002267_090 Hb_002267_090 Hb_001276_020--Hb_002267_090 Hb_000661_160 Hb_000661_160 Hb_001276_020--Hb_000661_160 Hb_004032_060 Hb_004032_060 Hb_001276_020--Hb_004032_060 Hb_001276_020--Hb_006634_040 Hb_005271_080 Hb_005271_080 Hb_001276_020--Hb_005271_080 Hb_009803_040 Hb_009803_040 Hb_006634_040--Hb_009803_040 Hb_000933_150 Hb_000933_150 Hb_006634_040--Hb_000933_150 Hb_005656_210 Hb_005656_210 Hb_006634_040--Hb_005656_210 Hb_006634_040--Hb_000661_160 Hb_003788_050 Hb_003788_050 Hb_006634_040--Hb_003788_050 Hb_001484_060 Hb_001484_060 Hb_006634_040--Hb_001484_060 Hb_002447_120 Hb_002447_120 Hb_003376_080--Hb_002447_120 Hb_006065_050 Hb_006065_050 Hb_003376_080--Hb_006065_050 Hb_028390_010 Hb_028390_010 Hb_003376_080--Hb_028390_010 Hb_062226_120 Hb_062226_120 Hb_003376_080--Hb_062226_120 Hb_000589_150 Hb_000589_150 Hb_003376_080--Hb_000589_150 Hb_009485_020 Hb_009485_020 Hb_130323_010--Hb_009485_020 Hb_000544_180 Hb_000544_180 Hb_130323_010--Hb_000544_180 Hb_003858_040 Hb_003858_040 Hb_130323_010--Hb_003858_040 Hb_130323_010--Hb_000300_320 Hb_001396_280 Hb_001396_280 Hb_130323_010--Hb_001396_280 Hb_000983_170 Hb_000983_170 Hb_130323_010--Hb_000983_170 Hb_001541_230 Hb_001541_230 Hb_000300_320--Hb_001541_230 Hb_000011_190 Hb_000011_190 Hb_000300_320--Hb_000011_190 Hb_005503_040 Hb_005503_040 Hb_000300_320--Hb_005503_040 Hb_000300_320--Hb_000983_170 Hb_012325_030 Hb_012325_030 Hb_000300_320--Hb_012325_030 Hb_002791_030 Hb_002791_030 Hb_000300_320--Hb_002791_030 Hb_002027_020--Hb_000589_150 Hb_000679_300 Hb_000679_300 Hb_002027_020--Hb_000679_300 Hb_000465_040 Hb_000465_040 Hb_002027_020--Hb_000465_040 Hb_000457_110 Hb_000457_110 Hb_002027_020--Hb_000457_110 Hb_000621_060 Hb_000621_060 Hb_002027_020--Hb_000621_060 Hb_001817_090 Hb_001817_090 Hb_002027_020--Hb_001817_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129673 0.0372011 0.0626533 0.135185 0.242918 0.0687277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0958951 0.0754424 0 0.0502034 0.0525648

CAGE analysis