Hb_003376_080

Information

Type -
Description -
Location Contig3376: 59633-62215
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13270g
description hypothetical protein
nr
ID XP_012082311.1
description PREDICTED: uncharacterized protein LOC105642190 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9X1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16479 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_080 0.0 - - PREDICTED: uncharacterized protein LOC105642190 isoform X1 [Jatropha curcas]
2 Hb_000025_070 0.1827204308 - - Uncharacterized protein TCM_040985 [Theobroma cacao]
3 Hb_002447_120 0.2116473014 - - hypothetical protein O988_01801, partial [Pseudogymnoascus pannorum VKM F-3808]
4 Hb_006065_050 0.2196920781 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
5 Hb_028390_010 0.224643616 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
6 Hb_062226_120 0.2276831616 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
7 Hb_000589_150 0.229049123 - - PREDICTED: factor of DNA methylation 1-like isoform X1 [Beta vulgaris subsp. vulgaris]
8 Hb_002027_020 0.2300443778 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
9 Hb_011457_070 0.2316850473 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
10 Hb_000300_320 0.231984678 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
11 Hb_002837_060 0.2352289869 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
12 Hb_132834_010 0.2362887536 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
13 Hb_002791_030 0.2364181885 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
14 Hb_001882_050 0.2387076664 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
15 Hb_020581_010 0.2401932553 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000008_270 0.2423818507 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
17 Hb_006788_160 0.2437098434 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
18 Hb_130323_010 0.244187641 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
19 Hb_000526_050 0.2445266631 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
20 Hb_040734_010 0.2454130338 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_080 Hb_003376_080 Hb_000025_070 Hb_000025_070 Hb_003376_080--Hb_000025_070 Hb_002447_120 Hb_002447_120 Hb_003376_080--Hb_002447_120 Hb_006065_050 Hb_006065_050 Hb_003376_080--Hb_006065_050 Hb_028390_010 Hb_028390_010 Hb_003376_080--Hb_028390_010 Hb_062226_120 Hb_062226_120 Hb_003376_080--Hb_062226_120 Hb_000589_150 Hb_000589_150 Hb_003376_080--Hb_000589_150 Hb_001276_020 Hb_001276_020 Hb_000025_070--Hb_001276_020 Hb_006634_040 Hb_006634_040 Hb_000025_070--Hb_006634_040 Hb_130323_010 Hb_130323_010 Hb_000025_070--Hb_130323_010 Hb_000300_320 Hb_000300_320 Hb_000025_070--Hb_000300_320 Hb_002027_020 Hb_002027_020 Hb_000025_070--Hb_002027_020 Hb_002791_030 Hb_002791_030 Hb_002447_120--Hb_002791_030 Hb_000236_400 Hb_000236_400 Hb_002447_120--Hb_000236_400 Hb_002461_060 Hb_002461_060 Hb_002447_120--Hb_002461_060 Hb_057688_010 Hb_057688_010 Hb_002447_120--Hb_057688_010 Hb_002374_370 Hb_002374_370 Hb_002447_120--Hb_002374_370 Hb_021596_030 Hb_021596_030 Hb_002447_120--Hb_021596_030 Hb_002837_060 Hb_002837_060 Hb_006065_050--Hb_002837_060 Hb_001016_050 Hb_001016_050 Hb_006065_050--Hb_001016_050 Hb_010697_040 Hb_010697_040 Hb_006065_050--Hb_010697_040 Hb_011609_140 Hb_011609_140 Hb_006065_050--Hb_011609_140 Hb_005000_320 Hb_005000_320 Hb_006065_050--Hb_005000_320 Hb_004109_230 Hb_004109_230 Hb_006065_050--Hb_004109_230 Hb_007044_080 Hb_007044_080 Hb_028390_010--Hb_007044_080 Hb_000982_160 Hb_000982_160 Hb_028390_010--Hb_000982_160 Hb_002527_030 Hb_002527_030 Hb_028390_010--Hb_002527_030 Hb_001689_020 Hb_001689_020 Hb_028390_010--Hb_001689_020 Hb_000933_090 Hb_000933_090 Hb_028390_010--Hb_000933_090 Hb_000645_050 Hb_000645_050 Hb_028390_010--Hb_000645_050 Hb_005015_060 Hb_005015_060 Hb_062226_120--Hb_005015_060 Hb_032990_010 Hb_032990_010 Hb_062226_120--Hb_032990_010 Hb_000313_220 Hb_000313_220 Hb_062226_120--Hb_000313_220 Hb_000212_120 Hb_000212_120 Hb_062226_120--Hb_000212_120 Hb_006658_020 Hb_006658_020 Hb_062226_120--Hb_006658_020 Hb_000300_270 Hb_000300_270 Hb_062226_120--Hb_000300_270 Hb_001350_010 Hb_001350_010 Hb_000589_150--Hb_001350_010 Hb_000103_080 Hb_000103_080 Hb_000589_150--Hb_000103_080 Hb_003405_050 Hb_003405_050 Hb_000589_150--Hb_003405_050 Hb_000589_150--Hb_028390_010 Hb_000714_030 Hb_000714_030 Hb_000589_150--Hb_000714_030 Hb_114343_010 Hb_114343_010 Hb_000589_150--Hb_114343_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.415845 0.153146 0.0457887 0.425303 0.519174 0.221286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278484 0.328156 0 0.182284 0.406921

CAGE analysis