Hb_002447_120

Information

Type -
Description -
Location Contig2447: 106748-110338
Sequence    

Annotation

kegg
ID ssl:SS1G_08974
description hypothetical protein
nr
ID KFY02933.1
description hypothetical protein O988_01801, partial [Pseudogymnoascus pannorum VKM F-3808]
swissprot
ID Q54ED4
description Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1
trembl
ID A0A093YJQ3
description Uncharacterized protein (Fragment) OS=Pseudogymnoascus pannorum VKM F-3808 GN=O988_01801 PE=4 SV=1
Gene Ontology
ID GO:0005634
description notchless protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25530: 109558-109690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_120 0.0 - - hypothetical protein O988_01801, partial [Pseudogymnoascus pannorum VKM F-3808]
2 Hb_002791_030 0.1093897808 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
3 Hb_000236_400 0.1136113247 - - hypothetical protein JCGZ_01058 [Jatropha curcas]
4 Hb_002461_060 0.1179088506 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
5 Hb_057688_010 0.1180243444 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
6 Hb_002374_370 0.1189241669 - - protein with unknown function [Ricinus communis]
7 Hb_021596_030 0.1241014376 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
8 Hb_001089_030 0.12435159 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
9 Hb_000227_220 0.1260736856 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
10 Hb_001040_100 0.1270957755 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
11 Hb_002311_290 0.1277638181 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
12 Hb_009486_180 0.128215083 - - unknown [Glycine max]
13 Hb_000526_050 0.1284873648 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
14 Hb_003438_050 0.1286416644 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
15 Hb_000710_040 0.1286587429 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
16 Hb_000000_150 0.128909625 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
17 Hb_002890_120 0.1294752634 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
18 Hb_000398_020 0.1303621829 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
19 Hb_008103_070 0.1317099562 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
20 Hb_028512_020 0.1321880358 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002447_120 Hb_002447_120 Hb_002791_030 Hb_002791_030 Hb_002447_120--Hb_002791_030 Hb_000236_400 Hb_000236_400 Hb_002447_120--Hb_000236_400 Hb_002461_060 Hb_002461_060 Hb_002447_120--Hb_002461_060 Hb_057688_010 Hb_057688_010 Hb_002447_120--Hb_057688_010 Hb_002374_370 Hb_002374_370 Hb_002447_120--Hb_002374_370 Hb_021596_030 Hb_021596_030 Hb_002447_120--Hb_021596_030 Hb_004668_060 Hb_004668_060 Hb_002791_030--Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_002791_030--Hb_001377_160 Hb_000398_020 Hb_000398_020 Hb_002791_030--Hb_000398_020 Hb_000318_120 Hb_000318_120 Hb_002791_030--Hb_000318_120 Hb_000261_100 Hb_000261_100 Hb_002791_030--Hb_000261_100 Hb_007558_070 Hb_007558_070 Hb_002791_030--Hb_007558_070 Hb_000710_040 Hb_000710_040 Hb_000236_400--Hb_000710_040 Hb_002890_120 Hb_002890_120 Hb_000236_400--Hb_002890_120 Hb_000648_080 Hb_000648_080 Hb_000236_400--Hb_000648_080 Hb_000236_400--Hb_000398_020 Hb_000011_100 Hb_000011_100 Hb_000236_400--Hb_000011_100 Hb_003943_010 Hb_003943_010 Hb_000236_400--Hb_003943_010 Hb_011909_120 Hb_011909_120 Hb_002461_060--Hb_011909_120 Hb_000462_170 Hb_000462_170 Hb_002461_060--Hb_000462_170 Hb_000487_210 Hb_000487_210 Hb_002461_060--Hb_000487_210 Hb_000340_400 Hb_000340_400 Hb_002461_060--Hb_000340_400 Hb_004450_040 Hb_004450_040 Hb_002461_060--Hb_004450_040 Hb_006520_040 Hb_006520_040 Hb_002461_060--Hb_006520_040 Hb_002205_030 Hb_002205_030 Hb_057688_010--Hb_002205_030 Hb_057688_010--Hb_000710_040 Hb_001089_030 Hb_001089_030 Hb_057688_010--Hb_001089_030 Hb_001720_040 Hb_001720_040 Hb_057688_010--Hb_001720_040 Hb_000803_270 Hb_000803_270 Hb_057688_010--Hb_000803_270 Hb_183510_020 Hb_183510_020 Hb_057688_010--Hb_183510_020 Hb_000116_450 Hb_000116_450 Hb_002374_370--Hb_000116_450 Hb_000258_070 Hb_000258_070 Hb_002374_370--Hb_000258_070 Hb_000347_430 Hb_000347_430 Hb_002374_370--Hb_000347_430 Hb_028512_020 Hb_028512_020 Hb_002374_370--Hb_028512_020 Hb_000340_530 Hb_000340_530 Hb_002374_370--Hb_000340_530 Hb_002217_250 Hb_002217_250 Hb_002374_370--Hb_002217_250 Hb_000086_380 Hb_000086_380 Hb_021596_030--Hb_000086_380 Hb_012506_050 Hb_012506_050 Hb_021596_030--Hb_012506_050 Hb_003438_050 Hb_003438_050 Hb_021596_030--Hb_003438_050 Hb_000638_120 Hb_000638_120 Hb_021596_030--Hb_000638_120 Hb_001579_320 Hb_001579_320 Hb_021596_030--Hb_001579_320 Hb_000130_410 Hb_000130_410 Hb_021596_030--Hb_000130_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.501538 0.636768 0.411042 0.662718 0.787889 0.760622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.640385 0.732514 0.08361 0.738585 0.7429

CAGE analysis