Hb_062226_120

Information

Type transcription factor
Description TF Family: LIM
Location Contig62226: 65490-72316
Sequence    

Annotation

kegg
ID rcu:RCOM_1482680
description zinc ion binding protein, putative
nr
ID XP_002524242.1
description zinc ion binding protein, putative [Ricinus communis]
swissprot
ID Q0WSN2
description Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1
trembl
ID B9SE23
description Zinc ion binding protein, putative OS=Ricinus communis GN=RCOM_1482680 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein da1-related 2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51602: 65475-72553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062226_120 0.0 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
2 Hb_005015_060 0.1024931053 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
3 Hb_032990_010 0.1036496181 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
4 Hb_000313_220 0.112600758 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
5 Hb_000212_120 0.1137664812 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
6 Hb_006658_020 0.115095277 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
7 Hb_000300_270 0.1193097458 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_001016_050 0.1197592846 - - drought-inducible protein [Manihot esculenta]
9 Hb_002400_320 0.1200665841 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004531_100 0.1205701868 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
11 Hb_000049_020 0.1207537684 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
12 Hb_004452_110 0.1210193958 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
13 Hb_011609_140 0.1221759465 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
14 Hb_001922_150 0.1230003715 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
15 Hb_000737_030 0.1231294658 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
16 Hb_002837_060 0.1235246047 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
17 Hb_001405_210 0.1242674746 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
18 Hb_086063_020 0.124532986 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
19 Hb_000527_010 0.12455013 - - katanin P80 subunit, putative [Ricinus communis]
20 Hb_000120_550 0.1250106227 - - hypothetical protein JCGZ_22416 [Jatropha curcas]

Gene co-expression network

sample Hb_062226_120 Hb_062226_120 Hb_005015_060 Hb_005015_060 Hb_062226_120--Hb_005015_060 Hb_032990_010 Hb_032990_010 Hb_062226_120--Hb_032990_010 Hb_000313_220 Hb_000313_220 Hb_062226_120--Hb_000313_220 Hb_000212_120 Hb_000212_120 Hb_062226_120--Hb_000212_120 Hb_006658_020 Hb_006658_020 Hb_062226_120--Hb_006658_020 Hb_000300_270 Hb_000300_270 Hb_062226_120--Hb_000300_270 Hb_000787_160 Hb_000787_160 Hb_005015_060--Hb_000787_160 Hb_002883_030 Hb_002883_030 Hb_005015_060--Hb_002883_030 Hb_015099_030 Hb_015099_030 Hb_005015_060--Hb_015099_030 Hb_001662_100 Hb_001662_100 Hb_005015_060--Hb_001662_100 Hb_001856_180 Hb_001856_180 Hb_005015_060--Hb_001856_180 Hb_000345_160 Hb_000345_160 Hb_005015_060--Hb_000345_160 Hb_007062_040 Hb_007062_040 Hb_032990_010--Hb_007062_040 Hb_005460_050 Hb_005460_050 Hb_032990_010--Hb_005460_050 Hb_000737_030 Hb_000737_030 Hb_032990_010--Hb_000737_030 Hb_003038_120 Hb_003038_120 Hb_032990_010--Hb_003038_120 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_032990_010--Hb_004586_060 Hb_002849_130 Hb_002849_130 Hb_000313_220--Hb_002849_130 Hb_000976_140 Hb_000976_140 Hb_000313_220--Hb_000976_140 Hb_015807_050 Hb_015807_050 Hb_000313_220--Hb_015807_050 Hb_001959_110 Hb_001959_110 Hb_000313_220--Hb_001959_110 Hb_004452_110 Hb_004452_110 Hb_000313_220--Hb_004452_110 Hb_005730_040 Hb_005730_040 Hb_000313_220--Hb_005730_040 Hb_002774_190 Hb_002774_190 Hb_000212_120--Hb_002774_190 Hb_001876_040 Hb_001876_040 Hb_000212_120--Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_000212_120--Hb_001157_230 Hb_032202_220 Hb_032202_220 Hb_000212_120--Hb_032202_220 Hb_000061_180 Hb_000061_180 Hb_000212_120--Hb_000061_180 Hb_000212_120--Hb_002883_030 Hb_001016_050 Hb_001016_050 Hb_006658_020--Hb_001016_050 Hb_006658_020--Hb_004452_110 Hb_002046_160 Hb_002046_160 Hb_006658_020--Hb_002046_160 Hb_000258_070 Hb_000258_070 Hb_006658_020--Hb_000258_070 Hb_002495_080 Hb_002495_080 Hb_006658_020--Hb_002495_080 Hb_132840_110 Hb_132840_110 Hb_006658_020--Hb_132840_110 Hb_000049_020 Hb_000049_020 Hb_000300_270--Hb_000049_020 Hb_000300_270--Hb_002046_160 Hb_000256_150 Hb_000256_150 Hb_000300_270--Hb_000256_150 Hb_000300_270--Hb_002883_030 Hb_000300_270--Hb_004452_110 Hb_000300_270--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.05728 3.54619 4.0657 7.99433 3.78846 4.34873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92141 4.35078 1.16311 3.87529 5.91744

CAGE analysis