Hb_009111_040

Information

Type -
Description -
Location Contig9111: 38286-46340
Sequence    

Annotation

kegg
ID rcu:RCOM_0422700
description hypothetical protein
nr
ID XP_012074255.1
description PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
swissprot
ID Q9QXP4
description Protein downstream neighbor of Son OS=Mus musculus GN=Donson PE=2 SV=2
trembl
ID A0A067KW43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08713 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62127: 38392-40527 , PASA_asmbl_62128: 38396-39160 , PASA_asmbl_62129: 38396-39160 , PASA_asmbl_62131: 44959-46279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009111_040 0.0 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
2 Hb_003029_030 0.1127884554 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
3 Hb_000313_300 0.1139003166 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
4 Hb_000661_160 0.1139995581 - - hexokinase [Manihot esculenta]
5 Hb_001357_380 0.1141511099 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000261_110 0.1173889361 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
7 Hb_006824_060 0.1207821367 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
8 Hb_006816_050 0.1220591781 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
9 Hb_000358_250 0.1224982088 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
10 Hb_000031_290 0.1237632887 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
11 Hb_000106_130 0.1249608219 - - unnamed protein product [Vitis vinifera]
12 Hb_144166_010 0.1256232792 - - PREDICTED: importin-13 [Jatropha curcas]
13 Hb_156825_010 0.1263997223 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
14 Hb_000174_110 0.1265582356 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
15 Hb_010068_040 0.1282276161 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
16 Hb_001586_040 0.1284190945 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
17 Hb_000211_110 0.1287882032 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
18 Hb_002273_130 0.12939353 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
19 Hb_000540_150 0.1302127704 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
20 Hb_008406_110 0.131986678 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009111_040 Hb_009111_040 Hb_003029_030 Hb_003029_030 Hb_009111_040--Hb_003029_030 Hb_000313_300 Hb_000313_300 Hb_009111_040--Hb_000313_300 Hb_000661_160 Hb_000661_160 Hb_009111_040--Hb_000661_160 Hb_001357_380 Hb_001357_380 Hb_009111_040--Hb_001357_380 Hb_000261_110 Hb_000261_110 Hb_009111_040--Hb_000261_110 Hb_006824_060 Hb_006824_060 Hb_009111_040--Hb_006824_060 Hb_002686_250 Hb_002686_250 Hb_003029_030--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_003029_030--Hb_131646_010 Hb_033720_010 Hb_033720_010 Hb_003029_030--Hb_033720_010 Hb_001408_100 Hb_001408_100 Hb_003029_030--Hb_001408_100 Hb_002351_020 Hb_002351_020 Hb_003029_030--Hb_002351_020 Hb_010068_040 Hb_010068_040 Hb_003029_030--Hb_010068_040 Hb_000106_130 Hb_000106_130 Hb_000313_300--Hb_000106_130 Hb_097783_020 Hb_097783_020 Hb_000313_300--Hb_097783_020 Hb_000211_110 Hb_000211_110 Hb_000313_300--Hb_000211_110 Hb_000313_300--Hb_001357_380 Hb_000785_030 Hb_000785_030 Hb_000313_300--Hb_000785_030 Hb_006916_040 Hb_006916_040 Hb_000313_300--Hb_006916_040 Hb_000661_160--Hb_000211_110 Hb_000661_160--Hb_000261_110 Hb_000661_160--Hb_000313_300 Hb_000661_160--Hb_000106_130 Hb_004032_060 Hb_004032_060 Hb_000661_160--Hb_004032_060 Hb_001357_380--Hb_000211_110 Hb_000059_140 Hb_000059_140 Hb_001357_380--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_001357_380--Hb_011942_080 Hb_001357_380--Hb_000106_130 Hb_001486_340 Hb_001486_340 Hb_001357_380--Hb_001486_340 Hb_001894_030 Hb_001894_030 Hb_001357_380--Hb_001894_030 Hb_000261_110--Hb_001357_380 Hb_000261_110--Hb_000313_300 Hb_017259_010 Hb_017259_010 Hb_000261_110--Hb_017259_010 Hb_012799_110 Hb_012799_110 Hb_000261_110--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000261_110--Hb_033095_020 Hb_000368_020 Hb_000368_020 Hb_006824_060--Hb_000368_020 Hb_000189_330 Hb_000189_330 Hb_006824_060--Hb_000189_330 Hb_007904_120 Hb_007904_120 Hb_006824_060--Hb_007904_120 Hb_001863_260 Hb_001863_260 Hb_006824_060--Hb_001863_260 Hb_001377_320 Hb_001377_320 Hb_006824_060--Hb_001377_320 Hb_008253_010 Hb_008253_010 Hb_006824_060--Hb_008253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.67289 3.54376 5.17901 3.0886 8.50455 5.41295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.71003 3.07327 1.34278 2.17162 2.24591

CAGE analysis