Hb_140595_010

Information

Type -
Description -
Location Contig140595: 2617-4483
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10997: 5344-6985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140595_010 0.0 - - -
2 Hb_000544_120 0.1440223754 - - PREDICTED: thymidylate kinase [Jatropha curcas]
3 Hb_000580_130 0.1713469559 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
4 Hb_006631_010 0.1725050405 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
5 Hb_107847_010 0.1729742687 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
6 Hb_125861_010 0.1742208805 - - hypothetical protein RCOM_0703970 [Ricinus communis]
7 Hb_000088_030 0.1787304729 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
8 Hb_045502_010 0.1789098558 - - prefoldin subunit 1 [Jatropha curcas]
9 Hb_001922_130 0.1822280235 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
10 Hb_035360_010 0.1830006188 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
11 Hb_001473_190 0.18531557 - - 50S ribosomal protein L20 [Hevea brasiliensis]
12 Hb_000619_070 0.1866344806 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
13 Hb_005535_060 0.1905620447 - - -
14 Hb_063409_020 0.1929059094 - - Calcium-binding protein, putative [Ricinus communis]
15 Hb_000808_060 0.1942949137 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
16 Hb_003581_110 0.1956537821 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
17 Hb_002897_040 0.1971347212 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
18 Hb_003125_140 0.1976714918 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
19 Hb_000173_210 0.1982625908 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
20 Hb_000101_210 0.2016241363 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]

Gene co-expression network

sample Hb_140595_010 Hb_140595_010 Hb_000544_120 Hb_000544_120 Hb_140595_010--Hb_000544_120 Hb_000580_130 Hb_000580_130 Hb_140595_010--Hb_000580_130 Hb_006631_010 Hb_006631_010 Hb_140595_010--Hb_006631_010 Hb_107847_010 Hb_107847_010 Hb_140595_010--Hb_107847_010 Hb_125861_010 Hb_125861_010 Hb_140595_010--Hb_125861_010 Hb_000088_030 Hb_000088_030 Hb_140595_010--Hb_000088_030 Hb_000544_120--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000544_120--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000544_120--Hb_000619_070 Hb_002897_040 Hb_002897_040 Hb_000544_120--Hb_002897_040 Hb_000173_210 Hb_000173_210 Hb_000544_120--Hb_000173_210 Hb_000018_160 Hb_000018_160 Hb_000544_120--Hb_000018_160 Hb_000120_570 Hb_000120_570 Hb_000580_130--Hb_000120_570 Hb_001534_070 Hb_001534_070 Hb_000580_130--Hb_001534_070 Hb_001922_130 Hb_001922_130 Hb_000580_130--Hb_001922_130 Hb_003125_140 Hb_003125_140 Hb_000580_130--Hb_003125_140 Hb_001703_130 Hb_001703_130 Hb_000580_130--Hb_001703_130 Hb_063409_020 Hb_063409_020 Hb_000580_130--Hb_063409_020 Hb_006631_010--Hb_002897_040 Hb_006631_010--Hb_000619_070 Hb_000016_280 Hb_000016_280 Hb_006631_010--Hb_000016_280 Hb_006631_010--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_006631_010--Hb_000608_340 Hb_000996_180 Hb_000996_180 Hb_107847_010--Hb_000996_180 Hb_089889_020 Hb_089889_020 Hb_107847_010--Hb_089889_020 Hb_009838_130 Hb_009838_130 Hb_107847_010--Hb_009838_130 Hb_000504_170 Hb_000504_170 Hb_107847_010--Hb_000504_170 Hb_009693_030 Hb_009693_030 Hb_107847_010--Hb_009693_030 Hb_000264_060 Hb_000264_060 Hb_107847_010--Hb_000264_060 Hb_012867_010 Hb_012867_010 Hb_125861_010--Hb_012867_010 Hb_101020_010 Hb_101020_010 Hb_125861_010--Hb_101020_010 Hb_125861_010--Hb_000580_130 Hb_125861_010--Hb_107847_010 Hb_125861_010--Hb_089889_020 Hb_000318_260 Hb_000318_260 Hb_000088_030--Hb_000318_260 Hb_002903_120 Hb_002903_120 Hb_000088_030--Hb_002903_120 Hb_002483_020 Hb_002483_020 Hb_000088_030--Hb_002483_020 Hb_045502_010 Hb_045502_010 Hb_000088_030--Hb_045502_010 Hb_000088_030--Hb_000580_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.633958 0.265341 0.193683 0.0848824 1.19374 0.554722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.144657 0.113635 0 0.0474525 0

CAGE analysis