Hb_118346_010

Information

Type -
Description -
Location Contig118346: 139-741
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9LPZ3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0000166
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118346_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_014919_020 0.2430246849 - - -
3 Hb_059301_010 0.2595042249 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_004330_030 0.2621038155 - - -
5 Hb_001944_030 0.2623332668 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
6 Hb_001214_170 0.2624128356 - - pyruvate kinase family protein [Medicago truncatula]
7 Hb_113823_010 0.2874047967 - - -
8 Hb_160233_020 0.2887696536 - - -
9 Hb_167508_010 0.2976251074 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
10 Hb_000832_330 0.2981758551 - - PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
11 Hb_000123_100 0.2988177201 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
12 Hb_005568_100 0.3040582334 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
13 Hb_000816_010 0.3044715548 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
14 Hb_161023_010 0.3074530924 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
15 Hb_030827_050 0.3129182485 - - hypothetical protein CISIN_1g040641mg, partial [Citrus sinensis]
16 Hb_003405_040 0.3154406353 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
17 Hb_045481_010 0.3237248296 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
18 Hb_005548_030 0.3355557469 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
19 Hb_000165_110 0.3360059598 - - unknown [Medicago truncatula]
20 Hb_153161_010 0.3360827031 - - phospholipid-transporting atpase, putative [Ricinus communis]

Gene co-expression network

sample Hb_118346_010 Hb_118346_010 Hb_014919_020 Hb_014919_020 Hb_118346_010--Hb_014919_020 Hb_059301_010 Hb_059301_010 Hb_118346_010--Hb_059301_010 Hb_004330_030 Hb_004330_030 Hb_118346_010--Hb_004330_030 Hb_001944_030 Hb_001944_030 Hb_118346_010--Hb_001944_030 Hb_001214_170 Hb_001214_170 Hb_118346_010--Hb_001214_170 Hb_113823_010 Hb_113823_010 Hb_118346_010--Hb_113823_010 Hb_161023_010 Hb_161023_010 Hb_014919_020--Hb_161023_010 Hb_000816_010 Hb_000816_010 Hb_014919_020--Hb_000816_010 Hb_000413_150 Hb_000413_150 Hb_014919_020--Hb_000413_150 Hb_188411_010 Hb_188411_010 Hb_014919_020--Hb_188411_010 Hb_014919_020--Hb_059301_010 Hb_005568_100 Hb_005568_100 Hb_014919_020--Hb_005568_100 Hb_045481_010 Hb_045481_010 Hb_059301_010--Hb_045481_010 Hb_003740_010 Hb_003740_010 Hb_059301_010--Hb_003740_010 Hb_059301_010--Hb_000816_010 Hb_000123_100 Hb_000123_100 Hb_059301_010--Hb_000123_100 Hb_160233_020 Hb_160233_020 Hb_059301_010--Hb_160233_020 Hb_004330_030--Hb_001944_030 Hb_000146_060 Hb_000146_060 Hb_004330_030--Hb_000146_060 Hb_004330_030--Hb_001214_170 Hb_005608_010 Hb_005608_010 Hb_004330_030--Hb_005608_010 Hb_007805_020 Hb_007805_020 Hb_004330_030--Hb_007805_020 Hb_001944_030--Hb_001214_170 Hb_000260_370 Hb_000260_370 Hb_001944_030--Hb_000260_370 Hb_007645_120 Hb_007645_120 Hb_001944_030--Hb_007645_120 Hb_005535_060 Hb_005535_060 Hb_001944_030--Hb_005535_060 Hb_000189_430 Hb_000189_430 Hb_001944_030--Hb_000189_430 Hb_001214_170--Hb_161023_010 Hb_001214_170--Hb_160233_020 Hb_167508_010 Hb_167508_010 Hb_001214_170--Hb_167508_010 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010 Hb_001214_170--Hb_113823_010 Hb_010979_010 Hb_010979_010 Hb_113823_010--Hb_010979_010 Hb_113823_010--Hb_000123_100 Hb_004524_070 Hb_004524_070 Hb_113823_010--Hb_004524_070 Hb_113823_010--Hb_000146_060 Hb_099990_030 Hb_099990_030 Hb_113823_010--Hb_099990_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.458141 0.484677 0.435583 0.0418723 0.590954 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.226064 0

CAGE analysis