Hb_014919_020

Information

Type -
Description -
Location Contig14919: 27420-27761
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014919_020 0.0 - - -
2 Hb_161023_010 0.1919267388 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
3 Hb_000816_010 0.1947809622 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
4 Hb_000413_150 0.1957513104 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
5 Hb_188411_010 0.1974170295 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
6 Hb_059301_010 0.2002322416 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
7 Hb_005568_100 0.2029803485 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
8 Hb_160233_020 0.2193655396 - - -
9 Hb_003740_010 0.2248576895 - - conserved hypothetical protein [Ricinus communis]
10 Hb_118346_010 0.2430246849 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
11 Hb_001214_170 0.2584633813 - - pyruvate kinase family protein [Medicago truncatula]
12 Hb_167508_010 0.2640358929 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
13 Hb_115116_010 0.266442846 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
14 Hb_005548_030 0.2717994102 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
15 Hb_000197_170 0.2740315654 - - ATP binding protein, putative [Ricinus communis]
16 Hb_001944_030 0.2751812394 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
17 Hb_000789_130 0.2770591472 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
18 Hb_045481_010 0.2820591398 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_061466_020 0.2828922038 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_032990_020 0.2837141536 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_014919_020 Hb_014919_020 Hb_161023_010 Hb_161023_010 Hb_014919_020--Hb_161023_010 Hb_000816_010 Hb_000816_010 Hb_014919_020--Hb_000816_010 Hb_000413_150 Hb_000413_150 Hb_014919_020--Hb_000413_150 Hb_188411_010 Hb_188411_010 Hb_014919_020--Hb_188411_010 Hb_059301_010 Hb_059301_010 Hb_014919_020--Hb_059301_010 Hb_005568_100 Hb_005568_100 Hb_014919_020--Hb_005568_100 Hb_161023_010--Hb_188411_010 Hb_160233_020 Hb_160233_020 Hb_161023_010--Hb_160233_020 Hb_001214_170 Hb_001214_170 Hb_161023_010--Hb_001214_170 Hb_061466_020 Hb_061466_020 Hb_161023_010--Hb_061466_020 Hb_167508_010 Hb_167508_010 Hb_161023_010--Hb_167508_010 Hb_000789_130 Hb_000789_130 Hb_000816_010--Hb_000789_130 Hb_000984_250 Hb_000984_250 Hb_000816_010--Hb_000984_250 Hb_003740_010 Hb_003740_010 Hb_000816_010--Hb_003740_010 Hb_000816_010--Hb_059301_010 Hb_045481_010 Hb_045481_010 Hb_000816_010--Hb_045481_010 Hb_000197_170 Hb_000197_170 Hb_000413_150--Hb_000197_170 Hb_000406_010 Hb_000406_010 Hb_000413_150--Hb_000406_010 Hb_093385_010 Hb_093385_010 Hb_000413_150--Hb_093385_010 Hb_000413_150--Hb_188411_010 Hb_115116_010 Hb_115116_010 Hb_000413_150--Hb_115116_010 Hb_188411_010--Hb_000406_010 Hb_188411_010--Hb_160233_020 Hb_133605_010 Hb_133605_010 Hb_188411_010--Hb_133605_010 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_059301_010--Hb_045481_010 Hb_059301_010--Hb_003740_010 Hb_000123_100 Hb_000123_100 Hb_059301_010--Hb_000123_100 Hb_059301_010--Hb_160233_020 Hb_010521_020 Hb_010521_020 Hb_005568_100--Hb_010521_020 Hb_005568_100--Hb_000789_130 Hb_002232_300 Hb_002232_300 Hb_005568_100--Hb_002232_300 Hb_005548_030 Hb_005548_030 Hb_005568_100--Hb_005548_030 Hb_001944_030 Hb_001944_030 Hb_005568_100--Hb_001944_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.345752 0.207715 0.3797 0.248975 0.34351 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0966184 0

CAGE analysis