Hb_188411_010

Information

Type -
Description -
Location Contig188411: 766-2669
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07950g
description POPTRDRAFT_830730; nuclear RNA-binding family protein
nr
ID XP_012070071.1
description PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03462 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18627: 700-1970 , PASA_asmbl_18628: 2170-2454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188411_010 0.0 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
2 Hb_161023_010 0.1181573363 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
3 Hb_000406_010 0.1824714191 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
4 Hb_160233_020 0.1889125365 - - -
5 Hb_133605_010 0.1909021128 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_014919_020 0.1974170295 - - -
7 Hb_011903_010 0.2275648887 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000347_090 0.2311820208 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
9 Hb_003740_010 0.2386346118 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000413_150 0.2414360435 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
11 Hb_001214_170 0.2543721317 - - pyruvate kinase family protein [Medicago truncatula]
12 Hb_061466_020 0.2680928118 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
13 Hb_002627_070 0.2777427097 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005504_020 0.2808621049 - - -
15 Hb_129459_010 0.281912898 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
16 Hb_004055_110 0.2847774246 - - PREDICTED: uncharacterized protein LOC105631442 isoform X1 [Jatropha curcas]
17 Hb_000816_010 0.2892694013 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
18 Hb_005568_100 0.2894650602 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
19 Hb_003096_020 0.2944074639 - - -
20 Hb_167508_010 0.2972795755 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]

Gene co-expression network

sample Hb_188411_010 Hb_188411_010 Hb_161023_010 Hb_161023_010 Hb_188411_010--Hb_161023_010 Hb_000406_010 Hb_000406_010 Hb_188411_010--Hb_000406_010 Hb_160233_020 Hb_160233_020 Hb_188411_010--Hb_160233_020 Hb_133605_010 Hb_133605_010 Hb_188411_010--Hb_133605_010 Hb_014919_020 Hb_014919_020 Hb_188411_010--Hb_014919_020 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_161023_010--Hb_160233_020 Hb_001214_170 Hb_001214_170 Hb_161023_010--Hb_001214_170 Hb_161023_010--Hb_014919_020 Hb_061466_020 Hb_061466_020 Hb_161023_010--Hb_061466_020 Hb_167508_010 Hb_167508_010 Hb_161023_010--Hb_167508_010 Hb_093385_010 Hb_093385_010 Hb_000406_010--Hb_093385_010 Hb_000406_010--Hb_133605_010 Hb_000413_150 Hb_000413_150 Hb_000406_010--Hb_000413_150 Hb_002343_030 Hb_002343_030 Hb_000406_010--Hb_002343_030 Hb_000197_170 Hb_000197_170 Hb_000406_010--Hb_000197_170 Hb_160233_020--Hb_001214_170 Hb_003740_010 Hb_003740_010 Hb_160233_020--Hb_003740_010 Hb_160233_020--Hb_014919_020 Hb_129459_010 Hb_129459_010 Hb_160233_020--Hb_129459_010 Hb_031403_030 Hb_031403_030 Hb_133605_010--Hb_031403_030 Hb_133605_010--Hb_003740_010 Hb_002570_010 Hb_002570_010 Hb_133605_010--Hb_002570_010 Hb_133605_010--Hb_161023_010 Hb_000816_010 Hb_000816_010 Hb_014919_020--Hb_000816_010 Hb_014919_020--Hb_000413_150 Hb_059301_010 Hb_059301_010 Hb_014919_020--Hb_059301_010 Hb_005568_100 Hb_005568_100 Hb_014919_020--Hb_005568_100 Hb_000347_090 Hb_000347_090 Hb_011903_010--Hb_000347_090 Hb_068347_010 Hb_068347_010 Hb_011903_010--Hb_068347_010 Hb_000663_030 Hb_000663_030 Hb_011903_010--Hb_000663_030 Hb_006502_100 Hb_006502_100 Hb_011903_010--Hb_006502_100 Hb_011903_010--Hb_161023_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08034 0.56995 0.925898 1.17228 1.08297 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis