Hb_000189_210

Information

Type -
Description -
Location Contig189: 223573-224448
Sequence    

Annotation

kegg
ID cic:CICLE_v10005534mg
description hypothetical protein
nr
ID XP_006420054.1
description hypothetical protein CICLE_v10005534mg [Citrus clementina]
swissprot
ID O32328
description Potassium-transporting ATPase B chain OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=kdpB PE=3 SV=2
trembl
ID V4U243
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005534mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_210 0.0 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
2 Hb_075449_020 0.2285204739 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
3 Hb_000836_120 0.2324065555 - - syntaxin, putative [Ricinus communis]
4 Hb_000218_030 0.236643869 - - -
5 Hb_000139_200 0.2370059303 - - catalytic, putative [Ricinus communis]
6 Hb_005565_010 0.2375561644 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
7 Hb_000243_380 0.2382925361 - - PREDICTED: histone H1 [Jatropha curcas]
8 Hb_001096_100 0.2428980819 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009222_020 0.2433281793 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
10 Hb_001348_150 0.2480015468 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
11 Hb_005702_030 0.2483045911 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
12 Hb_164945_040 0.2487763982 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
13 Hb_001638_040 0.2508558396 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
14 Hb_060237_020 0.2522974966 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001225_090 0.2542396584 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
16 Hb_008864_040 0.2564995421 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
17 Hb_001504_190 0.2593619706 - - double-stranded RNA binding protein, putative [Ricinus communis]
18 Hb_001053_030 0.2611572925 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
19 Hb_000173_480 0.2621856777 - - PREDICTED: calcium-binding protein 39 [Jatropha curcas]
20 Hb_000976_380 0.2628804137 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000189_210 Hb_000189_210 Hb_075449_020 Hb_075449_020 Hb_000189_210--Hb_075449_020 Hb_000836_120 Hb_000836_120 Hb_000189_210--Hb_000836_120 Hb_000218_030 Hb_000218_030 Hb_000189_210--Hb_000218_030 Hb_000139_200 Hb_000139_200 Hb_000189_210--Hb_000139_200 Hb_005565_010 Hb_005565_010 Hb_000189_210--Hb_005565_010 Hb_000243_380 Hb_000243_380 Hb_000189_210--Hb_000243_380 Hb_001662_030 Hb_001662_030 Hb_075449_020--Hb_001662_030 Hb_000390_220 Hb_000390_220 Hb_075449_020--Hb_000390_220 Hb_025306_010 Hb_025306_010 Hb_075449_020--Hb_025306_010 Hb_000540_120 Hb_000540_120 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_002273_050 Hb_002273_050 Hb_000836_120--Hb_002273_050 Hb_002235_240 Hb_002235_240 Hb_000836_120--Hb_002235_240 Hb_129204_060 Hb_129204_060 Hb_000836_120--Hb_129204_060 Hb_003849_260 Hb_003849_260 Hb_000836_120--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_000836_120--Hb_000215_410 Hb_001638_040 Hb_001638_040 Hb_000836_120--Hb_001638_040 Hb_001564_080 Hb_001564_080 Hb_000218_030--Hb_001564_080 Hb_002546_020 Hb_002546_020 Hb_000218_030--Hb_002546_020 Hb_000218_030--Hb_000243_380 Hb_000567_210 Hb_000567_210 Hb_000218_030--Hb_000567_210 Hb_002745_010 Hb_002745_010 Hb_000218_030--Hb_002745_010 Hb_001348_150 Hb_001348_150 Hb_000218_030--Hb_001348_150 Hb_162286_020 Hb_162286_020 Hb_000139_200--Hb_162286_020 Hb_000310_080 Hb_000310_080 Hb_000139_200--Hb_000310_080 Hb_010560_060 Hb_010560_060 Hb_000139_200--Hb_010560_060 Hb_000317_330 Hb_000317_330 Hb_000139_200--Hb_000317_330 Hb_000684_300 Hb_000684_300 Hb_000139_200--Hb_000684_300 Hb_055773_010 Hb_055773_010 Hb_000139_200--Hb_055773_010 Hb_009355_030 Hb_009355_030 Hb_005565_010--Hb_009355_030 Hb_005565_010--Hb_025306_010 Hb_000340_010 Hb_000340_010 Hb_005565_010--Hb_000340_010 Hb_000987_130 Hb_000987_130 Hb_005565_010--Hb_000987_130 Hb_045046_010 Hb_045046_010 Hb_005565_010--Hb_045046_010 Hb_005565_010--Hb_075449_020 Hb_001511_110 Hb_001511_110 Hb_000243_380--Hb_001511_110 Hb_000340_110 Hb_000340_110 Hb_000243_380--Hb_000340_110 Hb_029223_050 Hb_029223_050 Hb_000243_380--Hb_029223_050 Hb_001053_030 Hb_001053_030 Hb_000243_380--Hb_001053_030 Hb_000243_380--Hb_002745_010 Hb_144824_010 Hb_144824_010 Hb_000243_380--Hb_144824_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.30588 3.08129 0 0.373361 0.968314 0.344365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.539386 1.08398 0.257755 0.437475 0.0954111

CAGE analysis