Hb_000317_330

Information

Type -
Description -
Location Contig317: 233771-237172
Sequence    

Annotation

kegg
ID rcu:RCOM_1176820
description RNA binding protein, putative
nr
ID XP_012088387.1
description PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID B9RW95
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1176820 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33392: 233834-236005 , PASA_asmbl_33393: 236016-237168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_330 0.0 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
2 Hb_000373_270 0.1267793881 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
3 Hb_001341_030 0.1359421525 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
4 Hb_000920_040 0.1400936242 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
5 Hb_000078_180 0.1412515442 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
6 Hb_004218_150 0.1423459964 - - electron transporter, putative [Ricinus communis]
7 Hb_000032_620 0.1439638596 - - hypothetical protein RCOM_1311830 [Ricinus communis]
8 Hb_001288_080 0.1460624447 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
9 Hb_000186_040 0.1466838617 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001930_050 0.14953532 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
11 Hb_000798_060 0.150878571 transcription factor TF Family: PHD -
12 Hb_005565_040 0.1525138239 - - conserved hypothetical protein [Ricinus communis]
13 Hb_148121_080 0.1529385312 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
14 Hb_000310_080 0.1547813355 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
15 Hb_029920_050 0.1561851636 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
16 Hb_086063_010 0.157560778 - - soluble diacylglycerol acyltransferase [Ricinus communis]
17 Hb_164010_060 0.15831574 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
18 Hb_116349_160 0.1591270529 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
19 Hb_000768_050 0.15953363 - - hypothetical protein RCOM_0845740 [Ricinus communis]
20 Hb_170487_010 0.1596208011 - - -

Gene co-expression network

sample Hb_000317_330 Hb_000317_330 Hb_000373_270 Hb_000373_270 Hb_000317_330--Hb_000373_270 Hb_001341_030 Hb_001341_030 Hb_000317_330--Hb_001341_030 Hb_000920_040 Hb_000920_040 Hb_000317_330--Hb_000920_040 Hb_000078_180 Hb_000078_180 Hb_000317_330--Hb_000078_180 Hb_004218_150 Hb_004218_150 Hb_000317_330--Hb_004218_150 Hb_000032_620 Hb_000032_620 Hb_000317_330--Hb_000032_620 Hb_000373_270--Hb_001341_030 Hb_005147_110 Hb_005147_110 Hb_000373_270--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_000373_270--Hb_000300_280 Hb_004310_060 Hb_004310_060 Hb_000373_270--Hb_004310_060 Hb_000186_280 Hb_000186_280 Hb_000373_270--Hb_000186_280 Hb_000879_140 Hb_000879_140 Hb_000373_270--Hb_000879_140 Hb_001341_030--Hb_005147_110 Hb_001341_030--Hb_004310_060 Hb_018663_020 Hb_018663_020 Hb_001341_030--Hb_018663_020 Hb_001975_070 Hb_001975_070 Hb_001341_030--Hb_001975_070 Hb_001969_040 Hb_001969_040 Hb_001341_030--Hb_001969_040 Hb_000798_060 Hb_000798_060 Hb_000920_040--Hb_000798_060 Hb_002270_010 Hb_002270_010 Hb_000920_040--Hb_002270_010 Hb_000920_040--Hb_000300_280 Hb_000370_030 Hb_000370_030 Hb_000920_040--Hb_000370_030 Hb_002248_140 Hb_002248_140 Hb_000920_040--Hb_002248_140 Hb_015401_020 Hb_015401_020 Hb_000920_040--Hb_015401_020 Hb_004109_200 Hb_004109_200 Hb_000078_180--Hb_004109_200 Hb_000175_450 Hb_000175_450 Hb_000078_180--Hb_000175_450 Hb_000483_350 Hb_000483_350 Hb_000078_180--Hb_000483_350 Hb_000078_180--Hb_000798_060 Hb_000085_270 Hb_000085_270 Hb_000078_180--Hb_000085_270 Hb_001288_080 Hb_001288_080 Hb_000078_180--Hb_001288_080 Hb_000392_070 Hb_000392_070 Hb_004218_150--Hb_000392_070 Hb_006400_040 Hb_006400_040 Hb_004218_150--Hb_006400_040 Hb_116349_160 Hb_116349_160 Hb_004218_150--Hb_116349_160 Hb_002027_260 Hb_002027_260 Hb_004218_150--Hb_002027_260 Hb_005306_110 Hb_005306_110 Hb_004218_150--Hb_005306_110 Hb_000139_410 Hb_000139_410 Hb_004218_150--Hb_000139_410 Hb_086063_010 Hb_086063_010 Hb_000032_620--Hb_086063_010 Hb_000032_620--Hb_000798_060 Hb_001220_030 Hb_001220_030 Hb_000032_620--Hb_001220_030 Hb_001610_110 Hb_001610_110 Hb_000032_620--Hb_001610_110 Hb_005928_110 Hb_005928_110 Hb_000032_620--Hb_005928_110 Hb_164010_060 Hb_164010_060 Hb_000032_620--Hb_164010_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.9285 27.2225 9.18531 21.624 21.1436 37.2631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9953 19.3224 17.0906 14.3266 2.57173

CAGE analysis