Hb_002248_140

Information

Type -
Description -
Location Contig2248: 188252-191210
Sequence    

Annotation

kegg
ID rcu:RCOM_0073480
description acetylglucosaminyltransferase, putative (EC:2.4.2.26)
nr
ID XP_002533550.1
description acetylglucosaminyltransferase, putative [Ricinus communis]
swissprot
ID Q5QQ53
description Xylosyltransferase oxt OS=Drosophila pseudoobscura pseudoobscura GN=oxt PE=2 SV=1
trembl
ID B9T5N1
description Acetylglucosaminyltransferase, putative OS=Ricinus communis GN=RCOM_0073480 PE=4 SV=1
Gene Ontology
ID GO:0016020
description xylosyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23380: 188329-191839 , PASA_asmbl_23381: 191200-191675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_140 0.0 - - acetylglucosaminyltransferase, putative [Ricinus communis]
2 Hb_027028_020 0.1041442963 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
3 Hb_000920_040 0.1117343225 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
4 Hb_000866_030 0.1213301421 - - hypothetical protein RCOM_1615820 [Ricinus communis]
5 Hb_004310_050 0.1231391267 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
6 Hb_000915_050 0.1242812635 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002196_020 0.1263591049 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_008714_020 0.1269737591 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
9 Hb_000184_130 0.1278172072 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
10 Hb_002270_010 0.1280632284 - - Chaperone protein dnaJ, putative [Ricinus communis]
11 Hb_000209_020 0.1283959888 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
12 Hb_000318_510 0.1299165749 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
13 Hb_002163_030 0.1300628309 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
14 Hb_000836_360 0.1328820681 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
15 Hb_001516_100 0.1335267792 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
16 Hb_002111_060 0.1341529306 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
17 Hb_001040_160 0.1343175722 - - glutaredoxin, grx, putative [Ricinus communis]
18 Hb_000370_030 0.1344340115 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
19 Hb_000352_090 0.1351916778 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
20 Hb_001728_100 0.1358188376 - - hypothetical protein JCGZ_03429 [Jatropha curcas]

Gene co-expression network

sample Hb_002248_140 Hb_002248_140 Hb_027028_020 Hb_027028_020 Hb_002248_140--Hb_027028_020 Hb_000920_040 Hb_000920_040 Hb_002248_140--Hb_000920_040 Hb_000866_030 Hb_000866_030 Hb_002248_140--Hb_000866_030 Hb_004310_050 Hb_004310_050 Hb_002248_140--Hb_004310_050 Hb_000915_050 Hb_000915_050 Hb_002248_140--Hb_000915_050 Hb_002196_020 Hb_002196_020 Hb_002248_140--Hb_002196_020 Hb_008714_020 Hb_008714_020 Hb_027028_020--Hb_008714_020 Hb_027028_020--Hb_000866_030 Hb_027028_020--Hb_000915_050 Hb_003362_040 Hb_003362_040 Hb_027028_020--Hb_003362_040 Hb_001019_170 Hb_001019_170 Hb_027028_020--Hb_001019_170 Hb_001040_160 Hb_001040_160 Hb_027028_020--Hb_001040_160 Hb_000798_060 Hb_000798_060 Hb_000920_040--Hb_000798_060 Hb_002270_010 Hb_002270_010 Hb_000920_040--Hb_002270_010 Hb_000300_280 Hb_000300_280 Hb_000920_040--Hb_000300_280 Hb_000370_030 Hb_000370_030 Hb_000920_040--Hb_000370_030 Hb_015401_020 Hb_015401_020 Hb_000920_040--Hb_015401_020 Hb_187739_020 Hb_187739_020 Hb_000866_030--Hb_187739_020 Hb_006913_040 Hb_006913_040 Hb_000866_030--Hb_006913_040 Hb_000866_030--Hb_008714_020 Hb_002982_040 Hb_002982_040 Hb_000866_030--Hb_002982_040 Hb_002942_160 Hb_002942_160 Hb_000866_030--Hb_002942_160 Hb_010080_060 Hb_010080_060 Hb_004310_050--Hb_010080_060 Hb_000046_450 Hb_000046_450 Hb_004310_050--Hb_000046_450 Hb_000699_250 Hb_000699_250 Hb_004310_050--Hb_000699_250 Hb_000865_080 Hb_000865_080 Hb_004310_050--Hb_000865_080 Hb_004310_050--Hb_008714_020 Hb_006816_300 Hb_006816_300 Hb_004310_050--Hb_006816_300 Hb_000915_050--Hb_003362_040 Hb_000244_250 Hb_000244_250 Hb_000915_050--Hb_000244_250 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_004055_040 Hb_004055_040 Hb_000915_050--Hb_004055_040 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020 Hb_000318_510 Hb_000318_510 Hb_002196_020--Hb_000318_510 Hb_000321_070 Hb_000321_070 Hb_002196_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_002196_020--Hb_000160_040 Hb_067345_010 Hb_067345_010 Hb_002196_020--Hb_067345_010 Hb_006332_010 Hb_006332_010 Hb_002196_020--Hb_006332_010 Hb_002196_020--Hb_000915_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.1778 32.4669 2.52781 28.7114 29.2178 58.8189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1263 17.417 29.8489 17.3239 6.95034

CAGE analysis