Hb_009012_010

Information

Type -
Description -
Location Contig9012: 21972-27534
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009012_010 0.0 - - -
2 Hb_000107_320 0.2819886832 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
3 Hb_006452_130 0.2889981698 - - -
4 Hb_000402_010 0.2899553492 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
5 Hb_005975_020 0.3044137245 - - -
6 Hb_117240_010 0.3095327615 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
7 Hb_054328_010 0.3160158513 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]
8 Hb_000025_550 0.3169423473 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000189_210 0.3257694833 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
10 Hb_003376_310 0.3287011524 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
11 Hb_060237_020 0.3419970431 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000836_120 0.3431214513 - - syntaxin, putative [Ricinus communis]
13 Hb_004788_040 0.3443857512 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001301_190 0.3474130982 - - -
15 Hb_000215_410 0.3485104224 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
16 Hb_008983_010 0.3493612302 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
17 Hb_000152_020 0.3504740918 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
18 Hb_003371_120 0.3509843236 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
19 Hb_000829_080 0.3545590281 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
20 Hb_005702_030 0.3555903439 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_009012_010 Hb_009012_010 Hb_000107_320 Hb_000107_320 Hb_009012_010--Hb_000107_320 Hb_006452_130 Hb_006452_130 Hb_009012_010--Hb_006452_130 Hb_000402_010 Hb_000402_010 Hb_009012_010--Hb_000402_010 Hb_005975_020 Hb_005975_020 Hb_009012_010--Hb_005975_020 Hb_117240_010 Hb_117240_010 Hb_009012_010--Hb_117240_010 Hb_054328_010 Hb_054328_010 Hb_009012_010--Hb_054328_010 Hb_000107_320--Hb_005975_020 Hb_001999_190 Hb_001999_190 Hb_000107_320--Hb_001999_190 Hb_000908_010 Hb_000908_010 Hb_000107_320--Hb_000908_010 Hb_015388_030 Hb_015388_030 Hb_000107_320--Hb_015388_030 Hb_012753_080 Hb_012753_080 Hb_000107_320--Hb_012753_080 Hb_001301_190 Hb_001301_190 Hb_006452_130--Hb_001301_190 Hb_001660_090 Hb_001660_090 Hb_006452_130--Hb_001660_090 Hb_008064_010 Hb_008064_010 Hb_006452_130--Hb_008064_010 Hb_003849_260 Hb_003849_260 Hb_006452_130--Hb_003849_260 Hb_003906_190 Hb_003906_190 Hb_006452_130--Hb_003906_190 Hb_004788_040 Hb_004788_040 Hb_000402_010--Hb_004788_040 Hb_005389_110 Hb_005389_110 Hb_000402_010--Hb_005389_110 Hb_001269_040 Hb_001269_040 Hb_000402_010--Hb_001269_040 Hb_002273_050 Hb_002273_050 Hb_000402_010--Hb_002273_050 Hb_134894_010 Hb_134894_010 Hb_000402_010--Hb_134894_010 Hb_009848_030 Hb_009848_030 Hb_000402_010--Hb_009848_030 Hb_004899_280 Hb_004899_280 Hb_005975_020--Hb_004899_280 Hb_003362_060 Hb_003362_060 Hb_005975_020--Hb_003362_060 Hb_131949_010 Hb_131949_010 Hb_005975_020--Hb_131949_010 Hb_000171_040 Hb_000171_040 Hb_005975_020--Hb_000171_040 Hb_184798_040 Hb_184798_040 Hb_005975_020--Hb_184798_040 Hb_002180_010 Hb_002180_010 Hb_117240_010--Hb_002180_010 Hb_000829_080 Hb_000829_080 Hb_117240_010--Hb_000829_080 Hb_021888_090 Hb_021888_090 Hb_117240_010--Hb_021888_090 Hb_117240_010--Hb_004788_040 Hb_003100_010 Hb_003100_010 Hb_117240_010--Hb_003100_010 Hb_000589_400 Hb_000589_400 Hb_054328_010--Hb_000589_400 Hb_005702_030 Hb_005702_030 Hb_054328_010--Hb_005702_030 Hb_000703_240 Hb_000703_240 Hb_054328_010--Hb_000703_240 Hb_000640_300 Hb_000640_300 Hb_054328_010--Hb_000640_300 Hb_001529_050 Hb_001529_050 Hb_054328_010--Hb_001529_050 Hb_000215_410 Hb_000215_410 Hb_054328_010--Hb_000215_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00306 1.42863 0 0 0.511498 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.458244 0.119985 0 0.65368 0

CAGE analysis