Hb_012753_080

Information

Type -
Description -
Location Contig12753: 37420-38625
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_080 0.0 - - -
2 Hb_005699_080 0.2315599918 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
3 Hb_000107_320 0.2931213237 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
4 Hb_000190_100 0.3155336219 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
5 Hb_006711_050 0.3225075076 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
6 Hb_012702_030 0.3225326984 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
7 Hb_000152_020 0.3229567006 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
8 Hb_054328_010 0.3244410916 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]
9 Hb_000329_640 0.3270389381 - - -
10 Hb_000567_080 0.3293137964 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
11 Hb_005975_020 0.3348950564 - - -
12 Hb_029475_010 0.3352665724 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000215_410 0.3354208171 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
14 Hb_003673_030 0.3364047389 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
15 Hb_178817_010 0.3438764377 - - protease [Gossypium hirsutum]
16 Hb_030399_010 0.34518605 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
17 Hb_001140_340 0.3475074347 - - -
18 Hb_007380_010 0.3483435914 - - hypothetical protein EUGRSUZ_L00213, partial [Eucalyptus grandis]
19 Hb_005841_080 0.3532170448 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
20 Hb_001338_050 0.3556038998 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]

Gene co-expression network

sample Hb_012753_080 Hb_012753_080 Hb_005699_080 Hb_005699_080 Hb_012753_080--Hb_005699_080 Hb_000107_320 Hb_000107_320 Hb_012753_080--Hb_000107_320 Hb_000190_100 Hb_000190_100 Hb_012753_080--Hb_000190_100 Hb_006711_050 Hb_006711_050 Hb_012753_080--Hb_006711_050 Hb_012702_030 Hb_012702_030 Hb_012753_080--Hb_012702_030 Hb_000152_020 Hb_000152_020 Hb_012753_080--Hb_000152_020 Hb_011437_030 Hb_011437_030 Hb_005699_080--Hb_011437_030 Hb_000304_060 Hb_000304_060 Hb_005699_080--Hb_000304_060 Hb_015970_010 Hb_015970_010 Hb_005699_080--Hb_015970_010 Hb_005699_080--Hb_000190_100 Hb_163837_010 Hb_163837_010 Hb_005699_080--Hb_163837_010 Hb_005975_020 Hb_005975_020 Hb_000107_320--Hb_005975_020 Hb_001999_190 Hb_001999_190 Hb_000107_320--Hb_001999_190 Hb_000908_010 Hb_000908_010 Hb_000107_320--Hb_000908_010 Hb_009012_010 Hb_009012_010 Hb_000107_320--Hb_009012_010 Hb_015388_030 Hb_015388_030 Hb_000107_320--Hb_015388_030 Hb_000190_100--Hb_000152_020 Hb_007380_010 Hb_007380_010 Hb_000190_100--Hb_007380_010 Hb_017434_060 Hb_017434_060 Hb_000190_100--Hb_017434_060 Hb_005841_080 Hb_005841_080 Hb_000190_100--Hb_005841_080 Hb_000215_410 Hb_000215_410 Hb_000190_100--Hb_000215_410 Hb_000140_410 Hb_000140_410 Hb_000190_100--Hb_000140_410 Hb_006711_050--Hb_012702_030 Hb_000329_640 Hb_000329_640 Hb_006711_050--Hb_000329_640 Hb_003673_030 Hb_003673_030 Hb_006711_050--Hb_003673_030 Hb_029475_010 Hb_029475_010 Hb_006711_050--Hb_029475_010 Hb_178817_010 Hb_178817_010 Hb_006711_050--Hb_178817_010 Hb_030399_010 Hb_030399_010 Hb_006711_050--Hb_030399_010 Hb_012702_030--Hb_000329_640 Hb_012702_030--Hb_003673_030 Hb_012702_030--Hb_029475_010 Hb_012702_030--Hb_030399_010 Hb_012702_030--Hb_178817_010 Hb_000152_020--Hb_000140_410 Hb_000152_020--Hb_000215_410 Hb_004410_150 Hb_004410_150 Hb_000152_020--Hb_004410_150 Hb_001529_050 Hb_001529_050 Hb_000152_020--Hb_001529_050 Hb_000086_660 Hb_000086_660 Hb_000152_020--Hb_000086_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.249998 0.515326 0 0 0.0878172 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.143598 0.203114 0

CAGE analysis