Hb_011437_030

Information

Type -
Description -
Location Contig11437: 5808-10544
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010911131.1
description PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011437_030 0.0 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
2 Hb_015970_010 0.2177513553 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_003055_170 0.2213780295 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25 isoform X1 [Jatropha curcas]
4 Hb_000302_090 0.2506625169 - - PREDICTED: protein SGT1 homolog [Prunus mume]
5 Hb_003992_230 0.2508699033 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
6 Hb_005699_080 0.2756827141 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
7 Hb_000192_110 0.2768071625 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
8 Hb_000000_100 0.3236926562 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
9 Hb_000304_060 0.3257261205 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
10 Hb_006478_170 0.3271413608 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
11 Hb_005539_260 0.3273150538 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
12 Hb_000980_070 0.3282813162 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
13 Hb_000126_110 0.3287486259 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
14 Hb_000554_030 0.3322970343 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
15 Hb_012760_020 0.3344924746 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
16 Hb_006472_070 0.3385380059 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
17 Hb_007885_090 0.3394895916 - - hypothetical protein POPTR_0001s08950g [Populus trichocarpa]
18 Hb_005062_080 0.339671382 - - MLO-like protein 4 [Gossypium arboreum]
19 Hb_002656_010 0.3435340718 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
20 Hb_000302_210 0.3442318515 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011437_030 Hb_011437_030 Hb_015970_010 Hb_015970_010 Hb_011437_030--Hb_015970_010 Hb_003055_170 Hb_003055_170 Hb_011437_030--Hb_003055_170 Hb_000302_090 Hb_000302_090 Hb_011437_030--Hb_000302_090 Hb_003992_230 Hb_003992_230 Hb_011437_030--Hb_003992_230 Hb_005699_080 Hb_005699_080 Hb_011437_030--Hb_005699_080 Hb_000192_110 Hb_000192_110 Hb_011437_030--Hb_000192_110 Hb_015970_010--Hb_003055_170 Hb_015970_010--Hb_000192_110 Hb_015970_010--Hb_005699_080 Hb_001976_080 Hb_001976_080 Hb_015970_010--Hb_001976_080 Hb_007380_010 Hb_007380_010 Hb_015970_010--Hb_007380_010 Hb_002660_060 Hb_002660_060 Hb_003055_170--Hb_002660_060 Hb_003055_170--Hb_000192_110 Hb_026048_020 Hb_026048_020 Hb_003055_170--Hb_026048_020 Hb_008438_010 Hb_008438_010 Hb_003055_170--Hb_008438_010 Hb_000302_090--Hb_003992_230 Hb_002284_180 Hb_002284_180 Hb_000302_090--Hb_002284_180 Hb_001623_090 Hb_001623_090 Hb_000302_090--Hb_001623_090 Hb_003185_090 Hb_003185_090 Hb_000302_090--Hb_003185_090 Hb_012754_020 Hb_012754_020 Hb_000302_090--Hb_012754_020 Hb_002232_090 Hb_002232_090 Hb_003992_230--Hb_002232_090 Hb_046417_010 Hb_046417_010 Hb_003992_230--Hb_046417_010 Hb_003992_230--Hb_012754_020 Hb_003992_230--Hb_003185_090 Hb_012753_080 Hb_012753_080 Hb_005699_080--Hb_012753_080 Hb_000304_060 Hb_000304_060 Hb_005699_080--Hb_000304_060 Hb_000190_100 Hb_000190_100 Hb_005699_080--Hb_000190_100 Hb_163837_010 Hb_163837_010 Hb_005699_080--Hb_163837_010 Hb_026048_060 Hb_026048_060 Hb_000192_110--Hb_026048_060 Hb_000192_110--Hb_001976_080 Hb_000000_100 Hb_000000_100 Hb_000192_110--Hb_000000_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0465224 0.118661 0.0377965 0.052687 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.147687 0.10493 0

CAGE analysis