Hb_002284_180

Information

Type -
Description -
Location Contig2284: 134057-135294
Sequence    

Annotation

kegg
ID rcu:RCOM_1601700
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012073613.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
swissprot
ID Q9FJU9
description Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1
trembl
ID A0A067KKL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08057 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_180 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
2 Hb_156696_010 0.2097595497 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_003562_030 0.2162359125 - - -
4 Hb_001047_170 0.2172598665 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
5 Hb_002301_110 0.2236985027 - - PREDICTED: protein E6-like [Populus euphratica]
6 Hb_000676_170 0.228677276 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
7 Hb_005489_120 0.2290033121 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
8 Hb_001472_110 0.2293140426 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
9 Hb_002026_080 0.2312554918 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
10 Hb_000041_290 0.232992452 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_010162_010 0.2357882559 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
12 Hb_001369_620 0.237200531 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
13 Hb_009732_040 0.2379782699 - - hypothetical protein POPTR_0006s04880g [Populus trichocarpa]
14 Hb_000749_160 0.239074923 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_003050_100 0.2393734635 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
16 Hb_002597_010 0.24027836 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
17 Hb_123926_010 0.2408443577 - - PREDICTED: probable glutathione peroxidase 8-like [Glycine max]
18 Hb_036176_010 0.2413343051 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
19 Hb_164926_040 0.243223819 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
20 Hb_000011_380 0.2434700192 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_180 Hb_002284_180 Hb_156696_010 Hb_156696_010 Hb_002284_180--Hb_156696_010 Hb_003562_030 Hb_003562_030 Hb_002284_180--Hb_003562_030 Hb_001047_170 Hb_001047_170 Hb_002284_180--Hb_001047_170 Hb_002301_110 Hb_002301_110 Hb_002284_180--Hb_002301_110 Hb_000676_170 Hb_000676_170 Hb_002284_180--Hb_000676_170 Hb_005489_120 Hb_005489_120 Hb_002284_180--Hb_005489_120 Hb_010162_010 Hb_010162_010 Hb_156696_010--Hb_010162_010 Hb_001006_030 Hb_001006_030 Hb_156696_010--Hb_001006_030 Hb_111147_010 Hb_111147_010 Hb_156696_010--Hb_111147_010 Hb_002461_070 Hb_002461_070 Hb_156696_010--Hb_002461_070 Hb_001998_260 Hb_001998_260 Hb_156696_010--Hb_001998_260 Hb_028008_030 Hb_028008_030 Hb_156696_010--Hb_028008_030 Hb_000834_040 Hb_000834_040 Hb_003562_030--Hb_000834_040 Hb_001040_200 Hb_001040_200 Hb_003562_030--Hb_001040_200 Hb_188281_050 Hb_188281_050 Hb_003562_030--Hb_188281_050 Hb_000112_050 Hb_000112_050 Hb_003562_030--Hb_000112_050 Hb_003640_010 Hb_003640_010 Hb_003562_030--Hb_003640_010 Hb_003562_030--Hb_001047_170 Hb_001047_170--Hb_002301_110 Hb_001568_010 Hb_001568_010 Hb_001047_170--Hb_001568_010 Hb_002025_380 Hb_002025_380 Hb_001047_170--Hb_002025_380 Hb_019026_050 Hb_019026_050 Hb_001047_170--Hb_019026_050 Hb_001047_170--Hb_001040_200 Hb_001472_110 Hb_001472_110 Hb_002301_110--Hb_001472_110 Hb_164926_040 Hb_164926_040 Hb_002301_110--Hb_164926_040 Hb_002072_040 Hb_002072_040 Hb_002301_110--Hb_002072_040 Hb_000165_200 Hb_000165_200 Hb_002301_110--Hb_000165_200 Hb_002339_030 Hb_002339_030 Hb_002301_110--Hb_002339_030 Hb_002374_060 Hb_002374_060 Hb_000676_170--Hb_002374_060 Hb_000676_170--Hb_005489_120 Hb_000479_230 Hb_000479_230 Hb_000676_170--Hb_000479_230 Hb_000069_520 Hb_000069_520 Hb_000676_170--Hb_000069_520 Hb_003964_060 Hb_003964_060 Hb_000676_170--Hb_003964_060 Hb_003266_060 Hb_003266_060 Hb_000676_170--Hb_003266_060 Hb_000300_170 Hb_000300_170 Hb_005489_120--Hb_000300_170 Hb_001053_110 Hb_001053_110 Hb_005489_120--Hb_001053_110 Hb_001856_160 Hb_001856_160 Hb_005489_120--Hb_001856_160 Hb_012787_050 Hb_012787_050 Hb_005489_120--Hb_012787_050 Hb_000022_280 Hb_000022_280 Hb_005489_120--Hb_000022_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0480281 0.25002 0.202135 0.851319 0 0.0882344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.192417 0.916062 0.0713315

CAGE analysis