Hb_003964_060

Information

Type -
Description -
Location Contig3964: 88385-92792
Sequence    

Annotation

kegg
ID rcu:RCOM_1621030
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_012067760.1
description PREDICTED: beta-glucosidase 40 [Jatropha curcas]
swissprot
ID Q9FZE0
description Beta-glucosidase 40 OS=Arabidopsis thaliana GN=BGLU40 PE=2 SV=1
trembl
ID A0A067KYS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15694 PE=3 SV=1
Gene Ontology
ID GO:0009507
description beta-glucosidase 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39571: 88764-89409 , PASA_asmbl_39572: 89421-90533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003964_060 0.0 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
2 Hb_000070_070 0.100386744 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
3 Hb_008727_040 0.1118118547 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002025_050 0.1136825822 - - conserved hypothetical protein [Ricinus communis]
5 Hb_023956_010 0.1144955453 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_000676_170 0.1150028803 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
7 Hb_000749_160 0.1202575292 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_002236_010 0.1204121675 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
9 Hb_012787_050 0.1211888917 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
10 Hb_000479_230 0.1242200973 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
11 Hb_009838_120 0.1276110225 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
12 Hb_029866_080 0.1311612317 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
13 Hb_000856_250 0.1318970373 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_002553_070 0.1362717805 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
15 Hb_005679_120 0.1362924496 - - hypothetical protein RCOM_0284080 [Ricinus communis]
16 Hb_000956_070 0.1378302902 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
17 Hb_019026_050 0.1379909439 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004282_010 0.1394074943 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
19 Hb_003216_140 0.1401940616 - - F-box protein SNE, putative [Ricinus communis]
20 Hb_024868_010 0.1423898276 - - protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003964_060 Hb_003964_060 Hb_000070_070 Hb_000070_070 Hb_003964_060--Hb_000070_070 Hb_008727_040 Hb_008727_040 Hb_003964_060--Hb_008727_040 Hb_002025_050 Hb_002025_050 Hb_003964_060--Hb_002025_050 Hb_023956_010 Hb_023956_010 Hb_003964_060--Hb_023956_010 Hb_000676_170 Hb_000676_170 Hb_003964_060--Hb_000676_170 Hb_000749_160 Hb_000749_160 Hb_003964_060--Hb_000749_160 Hb_012787_050 Hb_012787_050 Hb_000070_070--Hb_012787_050 Hb_002236_010 Hb_002236_010 Hb_000070_070--Hb_002236_010 Hb_000070_070--Hb_023956_010 Hb_010417_090 Hb_010417_090 Hb_000070_070--Hb_010417_090 Hb_002553_070 Hb_002553_070 Hb_000070_070--Hb_002553_070 Hb_004282_010 Hb_004282_010 Hb_008727_040--Hb_004282_010 Hb_008727_040--Hb_012787_050 Hb_001568_010 Hb_001568_010 Hb_008727_040--Hb_001568_010 Hb_085315_010 Hb_085315_010 Hb_008727_040--Hb_085315_010 Hb_000956_070 Hb_000956_070 Hb_008727_040--Hb_000956_070 Hb_006846_030 Hb_006846_030 Hb_008727_040--Hb_006846_030 Hb_009838_120 Hb_009838_120 Hb_002025_050--Hb_009838_120 Hb_001645_030 Hb_001645_030 Hb_002025_050--Hb_001645_030 Hb_002592_050 Hb_002592_050 Hb_002025_050--Hb_002592_050 Hb_000866_320 Hb_000866_320 Hb_002025_050--Hb_000866_320 Hb_002025_050--Hb_000956_070 Hb_003847_050 Hb_003847_050 Hb_023956_010--Hb_003847_050 Hb_023956_010--Hb_002553_070 Hb_023956_010--Hb_006846_030 Hb_023956_010--Hb_012787_050 Hb_023956_010--Hb_002236_010 Hb_019026_050 Hb_019026_050 Hb_023956_010--Hb_019026_050 Hb_002374_060 Hb_002374_060 Hb_000676_170--Hb_002374_060 Hb_005489_120 Hb_005489_120 Hb_000676_170--Hb_005489_120 Hb_000479_230 Hb_000479_230 Hb_000676_170--Hb_000479_230 Hb_000069_520 Hb_000069_520 Hb_000676_170--Hb_000069_520 Hb_003266_060 Hb_003266_060 Hb_000676_170--Hb_003266_060 Hb_009615_030 Hb_009615_030 Hb_000749_160--Hb_009615_030 Hb_000749_160--Hb_000676_170 Hb_000749_160--Hb_008727_040 Hb_005144_080 Hb_005144_080 Hb_000749_160--Hb_005144_080 Hb_002580_020 Hb_002580_020 Hb_000749_160--Hb_002580_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.04584 1.10214 4.77396 0.0468709 0.00949289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0334925 2.73991 0.671876

CAGE analysis